1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:9.84e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1014_RS00380
Response regulator OmpR family
Bacillus sp. 7_6_55CFAA_CT2 · GCF_000238655
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000238655#HMPREF1014_RS00380Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 229 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-225 aa · 71 aa · 31.0% of protein
Raw token
Trans_reg_C:155:1.5e-28:225:74:77- Raw architecture: Response_reg:5:9.84e-36:114:111:111#Trans_reg_C:155:1.5e-28:225:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000238655::NZ_JH414708.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59496-62032Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1014_00056RefSeq proteinWP_009326303.1
Context group ID
GCF_000238655::NZ_JH414708.1::G00003Context members
HMPREF1014_RS00380HMPREF1014_RS00385
Partner locus tags
HMPREF1014_RS00380HMPREF1014_RS00385
Partner old locus tags
HMPREF1014_00056HMPREF1014_00057
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009326303.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1014_RS00380Primary locus identifier stored in the genes table.
Old locus tagHMPREF1014_00056Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH414708.1Sequence record reported by the local genomic context database.
Genomic interval59 496-60 185 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 496-62 032 ntGCF_000238655::NZ_JH414708.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000238655::NZ_JH414708.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH414708.1All displayed genes belong to this local TCS context.
Neighborhood span59 496-62 032 nt2 537 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 496 nt62 032 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1014_RS00380GCF_000238655#HMPREF1014_RS00380
RROmpRCurrent focus
59 496-60 185 nt · Forward (+)
HMPREF1014_RS00385GCF_000238655#HMPREF1014_RS00385
HKClassic
60 182-62 032 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000238655#HMPREF1014_RS00380The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1247684
Simplified PFAM architecture for RROC_1247684
PFAM domain coverage: 181 / 229 aa (79.0%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1247684
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-225 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_000238655#HMPREF1014_RS00380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 665 957 · GCF_000238655
AssemblyBacillus_sp_7_6_55CFAA_CT2_V1 · Scaffoldhaploid
Genome composition5 747 288 bp · 35,0% GCBacillus sp. 7_6_55CFAA_CT2
Signal transduction countsGenes 105 · HK 55 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key