1 HAMP#1
181-249 aa · 69 aa · 13.9% of protein
Raw token
HAMP:181:0.00000000000000753:249:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS05660
Histidine kinase, Classic
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210555#CC1_RS05660Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 495 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 HisKA#2
264-328 aa · 65 aa · 13.1% of protein
Raw token
HisKA:264:0.00000000000000235:328:65:643 HATPase_c#3
375-486 aa · 112 aa · 22.6% of protein
Raw token
HATPase_c:375:4.21e-31:486:112:109- Raw architecture: HAMP:181:0.00000000000000753:249:69:69#HisKA:264:0.00000000000000235:328:65:64#HATPase_c:375:4.21e-31:486:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210555::NC_021009.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1231773-1233942Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000210555::NC_021009.1::G00012Context members
CC1_RS05660CC1_RS05665
Partner locus tags
CC1_RS05660CC1_RS05665
Partner old locus tags
CC1_11910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_208728554.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS05660Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval1 231 773-1 233 260 nt1 488 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 231 773-1 233 942 ntGCF_000210555::NC_021009.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span1 231 773-1 233 942 nt2 170 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 231 773 nt1 233 942 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CC1_RS05660GCF_000210555#CC1_RS05660
HKClassicCurrent focus
1 231 773-1 233 260 nt · Forward (+)
CC1_RS05665GCF_000210555#CC1_RS05665
RROmpR
1 233 253-1 233 942 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS05660The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504335
Simplified PFAM architecture for HKOC_1504335
PFAM domain coverage: 229 / 495 aa (46.3%)
1 aa495 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[198-249] | HisKA[263-327] | HATPase_c[376-487]
- Domain count: 3
- Matched identifier: HKOC_1504335
- Positioned domains: HAMP 198-249 ; HisKA 263-327 ; HATPase_c 376-487
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS05660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key