1 HisKA#1
197-260 aa · 64 aa · 15.2% of protein
Raw token
HisKA:197:0.000000127:260:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS01200
Histidine kinase, Classic
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210555#CC1_RS01200Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 421 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-418 aa · 110 aa · 26.1% of protein
Raw token
HATPase_c:309:3.66e-30:418:110:109- Raw architecture: HisKA:197:0.000000127:260:64:64#HATPase_c:309:3.66e-30:418:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210555::NC_021009.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span267352-269282Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000210555::NC_021009.1::G00004Context members
CC1_RS01195CC1_RS01200
Partner locus tags
CC1_RS01195CC1_RS01200
Partner old locus tags
CC1_02600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117528655.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2TLN8Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2TLN8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS01200Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval268 017-269 282 nt1 266 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span267 352-269 282 ntGCF_000210555::NC_021009.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span267 352-269 282 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
267 352 nt269 282 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CC1_RS01195GCF_000210555#CC1_RS01195
RROmpR
267 352-268 041 nt · Forward (+)
CC1_RS01200GCF_000210555#CC1_RS01200
HKClassicCurrent focus
268 017-269 282 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS01200The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2256736
Simplified PFAM architecture for HKOC_2256736
PFAM domain coverage: 175 / 421 aa (41.6%)
1 aa421 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[197-260] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2256736
- Positioned domains: HisKA 197-260 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS01200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key