1 Response_reg#1
4-126 aa · 123 aa · 50.6% of protein
Raw token
Response_reg:4:4.55e-18:126:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS00675
Response regulator LytTR family
Coprococcus catus GD/7 · GCF_000210555
ClassRRTypeLytTRLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210555#CC1_RS00675Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage217 / 243 aa (89.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-234 aa · 94 aa · 38.7% of protein
Raw token
LytTR:141:0.000000000206:234:99:98- Raw architecture: Response_reg:4:4.55e-18:126:125:111#LytTR:141:0.000000000206:234:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210555::NC_021009.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span160355-161086Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_01480RefSeq proteinWP_208728461.1
Context group ID
GCF_000210555::NC_021009.1::G00002Context members
CC1_RS00675
Partner locus tags
CC1_RS00675
Partner old locus tags
CC1_01480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_208728461.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS00675Primary locus identifier stored in the genes table.
Old locus tagCC1_01480Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval160 355-161 086 nt732 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span160 355-161 086 ntGCF_000210555::NC_021009.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span160 355-161 086 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
160 355 nt161 086 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CC1_RS00675GCF_000210555#CC1_RS00675
RRLytTRCurrent focus
160 355-161 086 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS00675The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0824959
Simplified PFAM architecture for RROC_0824959
PFAM domain coverage: 199 / 243 aa (81.9%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-109] | LytTR[141-233]
- Domain count: 2
- Matched identifier: RROC_0824959
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109 ; LytTR 141-233 ; LytTR 141-233
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS00675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key