1 Response_reg#1
4-114 aa · 111 aa · 49.1% of protein
Raw token
Response_reg:4:1.59e-31:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ETEC_RS01260
Response regulator OmpR family
Escherichia coli ETEC H10407 · GCF_000210475
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210475#ETEC_RS01260Stable P2CS identifier used across views.
GenomeGCF_000210475Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 226 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.6% of protein
Raw token
Trans_reg_C:146:1.76e-29:221:77:77- Raw architecture: Response_reg:4:1.59e-31:114:111:111#Trans_reg_C:146:1.76e-29:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210475::NC_017633.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span266839-268916Genomic interval covered by the local TCS group.
Identifiers
Old locus tagETEC_0235RefSeq proteinWP_001188930.1
Context group ID
GCF_000210475::NC_017633.1::G00002Context members
ETEC_RS01260ETEC_RS01265
Partner locus tags
ETEC_RS01260ETEC_RS01265
Partner old locus tags
ETEC_0235ETEC_0236
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001188930.1Primary protein accession used for annex mappings.
UniProt accessionA0A0F6TYR9Primary UniProt accession resolved in the annex database.
UniProt IDA0A0F6TYR9_CITAMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagETEC_RS01260Primary locus identifier stored in the genes table.
Old locus tagETEC_0235Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017633.1Sequence record reported by the local genomic context database.
Genomic interval266 839-267 519 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span266 839-268 916 ntGCF_000210475::NC_017633.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210475::NC_017633.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017633.1All displayed genes belong to this local TCS context.
Neighborhood span266 839-268 916 nt2 078 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
266 839 nt268 916 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ETEC_RS01260GCF_000210475#ETEC_RS01260
RROmpRCurrent focus
266 839-267 519 nt · Forward (+)
ETEC_RS01265GCF_000210475#ETEC_RS01265
HKClassic
267 516-268 916 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000354295#ECBCE002MS12_RS05080Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1121027
Simplified PFAM architecture for RROC_1121027
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[146-221]
- Domain count: 2
- Matched identifier: RROC_1121027
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 146-221 ; Trans_reg_C 146-221
Cluster members and taxonomy
Representative gene: GCF_000354295#ECBCE002MS12_RS05080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 316 401 · GCF_000210475
AssemblyASM21047v1 · Complete Genomehaploid
Genome composition5 325 888 bp · 50,5% GCEscherichia coli ETEC H10407
Signal transduction countsGenes 68 · HK 33 · RR 35CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key