1 Response_reg#1
3-113 aa · 111 aa · 49.3% of protein
Raw token
Response_reg:3:6.7e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS06655
Response regulator OmpR family
Blautia obeum A2-162 · GCF_000210015
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210015#CK5_RS06655Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 225 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:145:1.14e-23:220:78:77- Raw architecture: Response_reg:3:6.7e-38:113:111:111#Trans_reg_C:145:1.14e-23:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210015::NC_021022.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1367888-1369737Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_13910RefSeq proteinWP_015541664.1
Context group ID
GCF_000210015::NC_021022.1::G00029Context members
CK5_RS06650CK5_RS06655
Partner locus tags
CK5_RS06650CK5_RS06655
Partner old locus tags
CK5_13900CK5_13910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015541664.1Primary protein accession used for annex mappings.
UniProt accessionA0A414J5J3Primary UniProt accession resolved in the annex database.
UniProt IDA0A414J5J3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS06655Primary locus identifier stored in the genes table.
Old locus tagCK5_13910Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval1 369 060-1 369 737 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 367 888-1 369 737 ntGCF_000210015::NC_021022.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span1 367 888-1 369 737 nt1 850 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 367 888 nt1 369 737 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK5_RS06650GCF_000210015#CK5_RS06650
HKClassic
1 367 888-1 369 063 nt · Reverse (-)
CK5_RS06655GCF_000210015#CK5_RS06655
RROmpRCurrent focus
1 369 060-1 369 737 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS06655The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1463834
Simplified PFAM architecture for RROC_1463834
PFAM domain coverage: 185 / 225 aa (82.2%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1463834
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 147-220 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS06655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key