1 HisKA#1
342-409 aa · 68 aa · 12.0% of protein
Raw token
HisKA:342:0.00000000000995:409:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS06600
Histidine kinase, Classic
Blautia obeum A2-162 · GCF_000210015
ClassHKTypeClassicLength569 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210015#CK5_RS06600Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length569 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 569 aa (31.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa569 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
452-564 aa · 113 aa · 19.9% of protein
Raw token
HATPase_c:452:6.75e-30:564:113:109- Raw architecture: HisKA:342:0.00000000000995:409:68:64#HATPase_c:452:6.75e-30:564:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210015::NC_021022.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1358214-1360680Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_13790RefSeq proteinWP_015541653.1
Context group ID
GCF_000210015::NC_021022.1::G00028Context members
CK5_RS06600CK5_RS06605
Partner locus tags
CK5_RS06600CK5_RS06605
Partner old locus tags
CK5_13790CK5_13800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015541653.1Primary protein accession used for annex mappings.
UniProt accessionD4LYW6Primary UniProt accession resolved in the annex database.
UniProt IDD4LYW6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS06600Primary locus identifier stored in the genes table.
Old locus tagCK5_13790Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval1 358 214-1 359 986 nt1 773 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 358 214-1 360 680 ntGCF_000210015::NC_021022.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span1 358 214-1 360 680 nt2 467 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 358 214 nt1 360 680 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK5_RS06600GCF_000210015#CK5_RS06600
HKClassicCurrent focus
1 358 214-1 359 986 nt · Forward (+)
CK5_RS06605GCF_000210015#CK5_RS06605
RROmpR
1 359 979-1 360 680 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS06600The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1216709
Simplified PFAM architecture for HKOC_1216709
PFAM domain coverage: 287 / 569 aa (50.4%)
1 aa569 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[71-178] | HisKA[342-409] | HATPase_c[453-563]
- Domain count: 3
- Matched identifier: HKOC_1216709
- Positioned domains: DUF4118 71-178 ; HisKA 342-409 ; HATPase_c 453-563
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS06600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key