1 HAMP#1
300-372 aa · 73 aa · 11.9% of protein
Raw token
HAMP:300:0.000000000000455:372:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS06445
Histidine kinase, Classic
Blautia obeum A2-162 · GCF_000210015
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210015#CK5_RS06445Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 611 aa (40.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation3 items
2 His_kinase#2
387-466 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:387:7.19e-28:466:80:803 HATPase_c#3
473-569 aa · 97 aa · 15.9% of protein
Raw token
HATPase_c:473:0.000000174:569:97:109- Raw architecture: HAMP:300:0.000000000000455:372:73:69#His_kinase:387:7.19e-28:466:80:80#HATPase_c:473:0.000000174:569:97:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210015::NC_021022.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1330302-1332898Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_13450RefSeq proteinWP_015541623.1
Context group ID
GCF_000210015::NC_021022.1::G00026Context members
CK5_RS06440CK5_RS06445
Partner locus tags
CK5_RS06440CK5_RS06445
Partner old locus tags
CK5_13440CK5_13450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015541623.1Primary protein accession used for annex mappings.
UniProt accessionD4LYT6Primary UniProt accession resolved in the annex database.
UniProt IDD4LYT6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS06445Primary locus identifier stored in the genes table.
Old locus tagCK5_13450Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval1 331 063-1 332 898 nt1 836 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 330 302-1 332 898 ntGCF_000210015::NC_021022.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span1 330 302-1 332 898 nt2 597 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 330 302 nt1 332 898 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK5_RS06440GCF_000210015#CK5_RS06440
RRunclassified
1 330 302-1 331 066 nt · Reverse (-)
CK5_RS06445GCF_000210015#CK5_RS06445
HKClassicCurrent focus
1 331 063-1 332 898 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS06445The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1000720
Simplified PFAM architecture for HKOC_1000720
PFAM domain coverage: 192 / 611 aa (31.4%)
1 aa611 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[317-372] | His_kinase[389-465] | HATPase_c[484-542]
- Domain count: 3
- Matched identifier: HKOC_1000720
- Positioned domains: HAMP 317-372 ; His_kinase 389-465 ; HATPase_c 484-542
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS06445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key