1 GGDEF#1
136-277 aa · 142 aa · 20.0% of protein
Raw token
GGDEF:136:2.57e-39:277:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS06350
Response regulator, RpfG family
Blautia obeum A2-162 · GCF_000210015
ClassRRTypeRpfGLength710 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210015#CK5_RS06350Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length710 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage360 / 710 aa (50.7%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa710 aa
Domain-by-domain annotation3 items
2 Response_reg#2
310-422 aa · 113 aa · 15.9% of protein
Raw token
Response_reg:310:2.48e-25:422:114:1113 HD#3
499-603 aa · 105 aa · 14.8% of protein
Raw token
HD:499:0.0000000000000488:603:105:110- Raw architecture: GGDEF:136:2.57e-39:277:157:160#Response_reg:310:2.48e-25:422:114:111#HD:499:0.0000000000000488:603:105:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210015::NC_021022.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1309745-1311877Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_13280RefSeq proteinWP_015541608.1
Context group ID
GCF_000210015::NC_021022.1::G00025Context members
CK5_RS06350
Partner locus tags
CK5_RS06350
Partner old locus tags
CK5_13280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015541608.1Primary protein accession used for annex mappings.
UniProt accessionD4LYS1Primary UniProt accession resolved in the annex database.
UniProt IDD4LYS1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS06350Primary locus identifier stored in the genes table.
Old locus tagCK5_13280Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval1 309 745-1 311 877 nt2 133 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 309 745-1 311 877 ntGCF_000210015::NC_021022.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span1 309 745-1 311 877 nt2 133 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 309 745 nt1 311 877 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CK5_RS06350GCF_000210015#CK5_RS06350
RRRpfGCurrent focus
1 309 745-1 311 877 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS06350The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0026496
Simplified PFAM architecture for RROC_0026496
PFAM domain coverage: 384 / 710 aa (54.1%)
1 aa710 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[136-278] | Response_reg[310-421] | HD_5[495-623]
- Domain count: 3
- Matched identifier: RROC_0026496
- Positioned domains: GGDEF 136-278 ; GGDEF 136-278 ; Response_reg 310-421 ; Response_reg 310-421 ; HD_5 495-623 ; HD_5 495-623
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS06350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key