1 Response_reg#1
9-110 aa · 102 aa · 42.9% of protein
Raw token
Response_reg:9:6.25e-18:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS05495
Response regulator LytTR family
Blautia obeum A2-162 · GCF_000210015
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210015#CK5_RS05495Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage191 / 238 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-230 aa · 89 aa · 37.4% of protein
Raw token
LytTR:142:2.39e-19:230:95:98- Raw architecture: Response_reg:9:6.25e-18:110:105:111#LytTR:142:2.39e-19:230:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210015::NC_021022.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1132492-1133208Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_11380RefSeq proteinWP_015541464.1
Context group ID
GCF_000210015::NC_021022.1::G00021Context members
CK5_RS05495
Partner locus tags
CK5_RS05495
Partner old locus tags
CK5_11380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015541464.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7I3U3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7I3U3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS05495Primary locus identifier stored in the genes table.
Old locus tagCK5_11380Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval1 132 492-1 133 208 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 132 492-1 133 208 ntGCF_000210015::NC_021022.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span1 132 492-1 133 208 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 132 492 nt1 133 208 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CK5_RS05495GCF_000210015#CK5_RS05495
RRLytTRCurrent focus
1 132 492-1 133 208 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS05495The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932867
Simplified PFAM architecture for RROC_0932867
PFAM domain coverage: 191 / 238 aa (80.3%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-110] | LytTR[143-229]
- Domain count: 2
- Matched identifier: RROC_0932867
- Positioned domains: Response_reg 7-110 ; Response_reg 7-110 ; LytTR 143-229 ; LytTR 143-229
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS05495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key