1 Response_reg#1
3-103 aa · 101 aa · 49.0% of protein
Raw token
Response_reg:3:2.09e-24:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS05215
Response regulator NarL family
Blautia obeum A2-162 · GCF_000210015
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210015#CK5_RS05215Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 206 aa (74.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-201 aa · 52 aa · 25.2% of protein
Raw token
HTH_LUXR:150:1.37e-20:201:52:58- Raw architecture: Response_reg:3:2.09e-24:103:101:111#HTH_LUXR:150:1.37e-20:201:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210015::NC_021022.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1064096-1065877Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_10810RefSeq proteinWP_015541413.1
Context group ID
GCF_000210015::NC_021022.1::G00019Context members
CK5_RS05215CK5_RS05220
Partner locus tags
CK5_RS05215CK5_RS05220
Partner old locus tags
CK5_10810CK5_10820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015541413.1Primary protein accession used for annex mappings.
UniProt accessionD4LY60Primary UniProt accession resolved in the annex database.
UniProt IDD4LY60_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS05215Primary locus identifier stored in the genes table.
Old locus tagCK5_10810Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval1 064 096-1 064 716 nt621 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 064 096-1 065 877 ntGCF_000210015::NC_021022.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span1 064 096-1 065 877 nt1 782 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 064 096 nt1 065 877 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK5_RS05215GCF_000210015#CK5_RS05215
RRNarLCurrent focus
1 064 096-1 064 716 nt · Reverse (-)
CK5_RS05220GCF_000210015#CK5_RS05220
HKClassic
1 064 795-1 065 877 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS05215The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2081148
Simplified PFAM architecture for RROC_2081148
PFAM domain coverage: 154 / 206 aa (74.8%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[150-201]
- Domain count: 2
- Matched identifier: RROC_2081148
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 150-201 ; GerE 150-201
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS05215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key