1 HisKA#1
172-242 aa · 71 aa · 17.9% of protein
Raw token
HisKA:172:0.000000000000904:242:71:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS03680
Histidine kinase, Classic
Blautia obeum A2-162 · GCF_000210015
ClassHKTypeClassicLength396 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210015#CK5_RS03680Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length396 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 396 aa (44.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa396 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
288-394 aa · 107 aa · 27.0% of protein
Raw token
HATPase_c:288:8.06e-30:394:108:109- Raw architecture: HisKA:172:0.000000000000904:242:71:64#HATPase_c:288:8.06e-30:394:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210015::NC_021022.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span760857-762761Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_07620RefSeq proteinWP_243023288.1
Context group ID
GCF_000210015::NC_021022.1::G00015Context members
CK5_RS03675CK5_RS03680
Partner locus tags
CK5_RS03675CK5_RS03680
Partner old locus tags
CK5_07610CK5_07620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243023288.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS03680Primary locus identifier stored in the genes table.
Old locus tagCK5_07620Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval761 571-762 761 nt1 191 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span760 857-762 761 ntGCF_000210015::NC_021022.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span760 857-762 761 nt1 905 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
760 857 nt762 761 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK5_RS03675GCF_000210015#CK5_RS03675
RROmpR
760 857-761 570 nt · Reverse (-)
CK5_RS03680GCF_000210015#CK5_RS03680
HKClassicCurrent focus
761 571-762 761 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS03680The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2479006
Simplified PFAM architecture for HKOC_2479006
PFAM domain coverage: 177 / 396 aa (44.7%)
1 aa396 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[172-242] | HATPase_c[289-394]
- Domain count: 2
- Matched identifier: HKOC_2479006
- Positioned domains: HisKA 172-242 ; HATPase_c 289-394
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS03680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key