1 HAMP#1
153-222 aa · 70 aa · 15.3% of protein
Raw token
HAMP:153:0.000037:222:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS02735
Histidine kinase, Classic
Blautia obeum A2-162 · GCF_000210015
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210015#CK5_RS02735Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 458 aa (52.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-294 aa · 62 aa · 13.5% of protein
Raw token
HisKA:233:0.0000000000109:294:62:643 HATPase_c#3
346-451 aa · 106 aa · 23.1% of protein
Raw token
HATPase_c:346:2.39e-16:451:106:109- Raw architecture: HAMP:153:0.000037:222:70:69#HisKA:233:0.0000000000109:294:62:64#HATPase_c:346:2.39e-16:451:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210015::NC_021022.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span563932-565958Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_05680RefSeq proteinWP_015541032.1
Context group ID
GCF_000210015::NC_021022.1::G00012Context members
CK5_RS02730CK5_RS02735
Partner locus tags
CK5_RS02730CK5_RS02735
Partner old locus tags
CK5_05670CK5_05680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015541032.1Primary protein accession used for annex mappings.
UniProt accessionA0A414J0E3Primary UniProt accession resolved in the annex database.
UniProt IDA0A414J0E3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS02735Primary locus identifier stored in the genes table.
Old locus tagCK5_05680Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval564 582-565 958 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span563 932-565 958 ntGCF_000210015::NC_021022.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span563 932-565 958 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
563 932 nt565 958 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK5_RS02730GCF_000210015#CK5_RS02730
RROmpR
563 932-564 594 nt · Forward (+)
CK5_RS02735GCF_000210015#CK5_RS02735
HKClassicCurrent focus
564 582-565 958 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS02735The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1858565
Simplified PFAM architecture for HKOC_1858565
PFAM domain coverage: 167 / 458 aa (36.5%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-294] | HATPase_c[346-451]
- Domain count: 2
- Matched identifier: HKOC_1858565
- Positioned domains: HisKA 234-294 ; HATPase_c 346-451
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS02735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key