1 SBP_bac_3#1
44-260 aa · 217 aa · 22.8% of protein
Raw token
SBP_bac_3:44:1.87e-29:260:227:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS01610
Histidine kinase, Hybrid
Blautia obeum A2-162 · GCF_000210015
ClassHKTypeHybridLength951 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210015#CK5_RS01610Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3PBPbHisKAHATPase_cResponse_reg
Protein length951 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage728 / 951 aa (76.6%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 PBPb,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa951 aa
Domain-by-domain annotation5 items
2 PBPb#2
282-486 aa · 205 aa · 21.6% of protein
Raw token
PBPb:282:0.0000000111:486:215:2193 HisKA#3
571-639 aa · 69 aa · 7.3% of protein
Raw token
HisKA:571:5.16e-19:639:69:644 HATPase_c#4
685-803 aa · 119 aa · 12.5% of protein
Raw token
HATPase_c:685:9.85e-30:803:119:1095 Response_reg#5
829-946 aa · 118 aa · 12.4% of protein
Raw token
Response_reg:829:2.68e-28:946:118:111- Raw architecture: SBP_bac_3:44:1.87e-29:260:227:224#PBPb:282:0.0000000111:486:215:219#HisKA:571:5.16e-19:639:69:64#HATPase_c:685:9.85e-30:803:119:109#Response_reg:829:2.68e-28:946:118:111
- Domain description: 1 SBP_bac_3,1 PBPb,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210015::NC_021022.1::G00007
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span347951-353798Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_03330RefSeq proteinWP_015540880.1
Context group ID
GCF_000210015::NC_021022.1::G00007Context members
CK5_RS01605CK5_RS01610
Partner locus tags
CK5_RS01605CK5_RS01610
Partner old locus tags
CK5_03320CK5_03330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015540880.1Primary protein accession used for annex mappings.
UniProt accessionD4LWF0Primary UniProt accession resolved in the annex database.
UniProt IDD4LWF0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS01610Primary locus identifier stored in the genes table.
Old locus tagCK5_03330Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval350 943-353 798 nt2 856 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span347 951-353 798 ntGCF_000210015::NC_021022.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span347 951-353 798 nt5 848 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
347 951 nt353 798 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK5_RS01605GCF_000210015#CK5_RS01605
HKHybrid
347 951-350 899 nt · Forward (+)
CK5_RS01610GCF_000210015#CK5_RS01610
HKHybridCurrent focus
350 943-353 798 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS01610The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0325274
Simplified PFAM architecture for HKOC_0325274
PFAM domain coverage: 517 / 951 aa (54.4%)
1 aa951 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[46-261] | HisKA[572-639] | HATPase_c[686-801] | Response_reg[829-945]
- Domain count: 4
- Matched identifier: HKOC_0325274
- Positioned domains: SBP_bac_3 46-261 ; HisKA 572-639 ; HATPase_c 686-801 ; Response_reg 829-945
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS01610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key