1 Response_reg#1
7-110 aa · 104 aa · 20.8% of protein
Raw token
Response_reg:7:1.01e-27:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS01595
Response regulator RpfG family
Blautia obeum A2-162 · GCF_000210015
ClassRRTypeRpfGLength499 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210015#CK5_RS01595Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 499 aa (42.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa499 aa
Domain-by-domain annotation2 items
2 HD#2
193-299 aa · 107 aa · 21.4% of protein
Raw token
HD:193:0.00000000000000264:299:107:110- Raw architecture: Response_reg:7:1.01e-27:110:105:111#HD:193:0.00000000000000264:299:107:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210015::NC_021022.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span342406-346077Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_03300RefSeq proteinWP_015540877.1
Context group ID
GCF_000210015::NC_021022.1::G00006Context members
CK5_RS01590CK5_RS01595
Partner locus tags
CK5_RS01590CK5_RS01595
Partner old locus tags
CK5_03290CK5_03300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015540877.1Primary protein accession used for annex mappings.
UniProt accessionD4LWE7Primary UniProt accession resolved in the annex database.
UniProt IDD4LWE7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS01595Primary locus identifier stored in the genes table.
Old locus tagCK5_03300Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval344 578-346 077 nt1 500 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span342 406-346 077 ntGCF_000210015::NC_021022.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span342 406-346 077 nt3 672 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
342 406 nt346 077 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK5_RS01590GCF_000210015#CK5_RS01590
HKHybrid
342 406-344 568 nt · Forward (+)
CK5_RS01595GCF_000210015#CK5_RS01595
RRRpfGCurrent focus
344 578-346 077 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS01595The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0158965
Simplified PFAM architecture for RROC_0158965
PFAM domain coverage: 249 / 499 aa (49.9%)
1 aa499 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[7-117] | HD_5[183-320]
- Domain count: 2
- Matched identifier: RROC_0158965
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; HD_5 183-320 ; HD_5 183-320
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS01595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key