1 HisKA#1
10-69 aa · 60 aa · 26.5% of protein
Raw token
HisKA:10:0.000000128:69:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS01000
Histidine kinase, Classic
Blautia obeum A2-162 · GCF_000210015
ClassHKTypeClassicLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210015#CK5_RS01000Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 226 aa (73.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
121-225 aa · 105 aa · 46.5% of protein
Raw token
HATPase_c:121:4.44e-35:225:109:109- Raw architecture: HisKA:10:0.000000128:69:60:64#HATPase_c:121:4.44e-35:225:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210015::NC_021022.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span217370-218050Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_02120RefSeq proteinWP_015540770.1
Context group ID
GCF_000210015::NC_021022.1::G00004Context members
CK5_RS01000
Partner locus tags
CK5_RS01000
Partner old locus tags
CK5_02120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015540770.1Primary protein accession used for annex mappings.
UniProt accessionD4LW40Primary UniProt accession resolved in the annex database.
UniProt IDD4LW40_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS01000Primary locus identifier stored in the genes table.
Old locus tagCK5_02120Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval217 370-218 050 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span217 370-218 050 ntGCF_000210015::NC_021022.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span217 370-218 050 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
217 370 nt218 050 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CK5_RS01000GCF_000210015#CK5_RS01000
HKClassicCurrent focus
217 370-218 050 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS01000The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2926929
Simplified PFAM architecture for HKOC_2926929
PFAM domain coverage: 159 / 226 aa (70.4%)
1 aa226 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[18-71] | HATPase_c[121-225]
- Domain count: 2
- Matched identifier: HKOC_2926929
- Positioned domains: HisKA 18-71 ; HATPase_c 121-225
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS01000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key