1 HisKA#1
297-363 aa · 67 aa · 10.0% of protein
Raw token
HisKA:297:1.04e-16:363:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS00725
Histidine kinase, Hybrid
Blautia obeum A2-162 · GCF_000210015
ClassHKTypeHybridLength672 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210015#CK5_RS00725Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length672 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage297 / 672 aa (44.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa672 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
409-524 aa · 116 aa · 17.3% of protein
Raw token
HATPase_c:409:1.32e-26:524:116:1093 Response_reg#3
552-665 aa · 114 aa · 17.0% of protein
Raw token
Response_reg:552:5.57e-28:665:114:111- Raw architecture: HisKA:297:1.04e-16:363:67:64#HATPase_c:409:1.32e-26:524:116:109#Response_reg:552:5.57e-28:665:114:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210015::NC_021022.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span158695-160713Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_01570RefSeq proteinWP_015540726.1
Context group ID
GCF_000210015::NC_021022.1::G00003Context members
CK5_RS00725
Partner locus tags
CK5_RS00725
Partner old locus tags
CK5_01570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015540726.1Primary protein accession used for annex mappings.
UniProt accessionD4LVZ6Primary UniProt accession resolved in the annex database.
UniProt IDD4LVZ6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS00725Primary locus identifier stored in the genes table.
Old locus tagCK5_01570Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval158 695-160 713 nt2 019 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span158 695-160 713 ntGCF_000210015::NC_021022.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span158 695-160 713 nt2 019 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
158 695 nt160 713 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CK5_RS00725GCF_000210015#CK5_RS00725
HKHybridCurrent focus
158 695-160 713 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS00725The current gene is the representative for this cluster.
PFAM architectureSnoaL_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0838935
Simplified PFAM architecture for HKOC_0838935
PFAM domain coverage: 417 / 672 aa (62.1%)
1 aa672 aa
SnoaL_3HisKAHATPase_cResponse_reg
- Simplified architecture: SnoaL_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SnoaL_3[10-130] | HisKA[297-362] | HATPase_c[410-525] | Response_reg[552-665]
- Domain count: 4
- Matched identifier: HKOC_0838935
- Positioned domains: SnoaL_3 10-130 ; HisKA 297-362 ; HATPase_c 410-525 ; Response_reg 552-665
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS00725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key