1 dCache_1#1
43-286 aa · 244 aa · 40.6% of protein
Raw token
dCache_1:43:0.00000000000155:286:252:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS00255
Histidine kinase, Classic
Blautia obeum A2-162 · GCF_000210015
ClassHKTypeClassicLength601 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210015#CK5_RS00255Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length601 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage498 / 601 aa (82.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa601 aa
Domain-by-domain annotation4 items
2 HAMP#2
305-372 aa · 68 aa · 11.3% of protein
Raw token
HAMP:305:0.00000000000311:372:68:693 His_kinase#3
387-466 aa · 80 aa · 13.3% of protein
Raw token
His_kinase:387:3.88e-33:466:80:804 HATPase_c#4
486-591 aa · 106 aa · 17.6% of protein
Raw token
HATPase_c:486:0.000000000566:591:107:109- Raw architecture: dCache_1:43:0.00000000000155:286:252:195#HAMP:305:0.00000000000311:372:68:69#His_kinase:387:3.88e-33:466:80:80#HATPase_c:486:0.000000000566:591:107:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210015::NC_021022.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58092-61099Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_00630RefSeq proteinWP_015540641.1
Context group ID
GCF_000210015::NC_021022.1::G00001Context members
CK5_RS00255CK5_RS00260
Partner locus tags
CK5_RS00255CK5_RS00260
Partner old locus tags
CK5_00630CK5_00640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015540641.1Primary protein accession used for annex mappings.
UniProt accessionA0A414J9R3Primary UniProt accession resolved in the annex database.
UniProt IDA0A414J9R3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS00255Primary locus identifier stored in the genes table.
Old locus tagCK5_00630Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval58 092-59 897 nt1 806 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 092-61 099 ntGCF_000210015::NC_021022.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span58 092-61 099 nt3 008 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 092 nt61 099 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK5_RS00255GCF_000210015#CK5_RS00255
HKClassicCurrent focus
58 092-59 897 nt · Forward (+)
CK5_RS00260GCF_000210015#CK5_RS00260
RRunclassified
59 882-61 099 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS00255The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1047526
Simplified PFAM architecture for HKOC_1047526
PFAM domain coverage: 463 / 601 aa (77.0%)
1 aa601 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[59-285] | HAMP[321-371] | His_kinase[387-464] | HATPase_c[485-591]
- Domain count: 4
- Matched identifier: HKOC_1047526
- Positioned domains: dCache_1 59-285 ; HAMP 321-371 ; His_kinase 387-464 ; HATPase_c 485-591
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS00255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key