1 Response_reg#1
3-103 aa · 101 aa · 46.3% of protein
Raw token
Response_reg:3:7.7e-26:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ERE_RS11425
Response regulator NarL family
Agathobacter rectalis M104/1 · GCF_000209955
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209955#ERE_RS11425Stable P2CS identifier used across views.
GenomeGCF_000209955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 218 aa (70.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-212 aa · 53 aa · 24.3% of protein
Raw token
HTH_LUXR:160:4.1e-19:212:53:58- Raw architecture: Response_reg:3:7.7e-26:103:101:111#HTH_LUXR:160:4.1e-19:212:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209955::NC_021044.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2428239-2430089Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERE_23770RefSeq proteinWP_015569093.1
Context group ID
GCF_000209955::NC_021044.1::G00029Context members
ERE_RS11425ERE_RS11430
Partner locus tags
ERE_RS11425ERE_RS11430
Partner old locus tags
ERE_23770ERE_23780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015569093.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagERE_RS11425Primary locus identifier stored in the genes table.
Old locus tagERE_23770Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021044.1Sequence record reported by the local genomic context database.
Genomic interval2 428 239-2 428 895 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 428 239-2 430 089 ntGCF_000209955::NC_021044.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209955::NC_021044.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021044.1All displayed genes belong to this local TCS context.
Neighborhood span2 428 239-2 430 089 nt1 851 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 428 239 nt2 430 089 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ERE_RS11425GCF_000209955#ERE_RS11425
RRNarLCurrent focus
2 428 239-2 428 895 nt · Reverse (-)
ERE_RS11430GCF_000209955#ERE_RS11430
HKClassic
2 428 947-2 430 089 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209955#ERE_RS11425The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1812534
Simplified PFAM architecture for RROC_1812534
PFAM domain coverage: 155 / 218 aa (71.1%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[160-212]
- Domain count: 2
- Matched identifier: RROC_1812534
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 160-212 ; GerE 160-212
Cluster members and taxonomy
Representative gene: GCF_000209955#ERE_RS11425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 317 · GCF_000209955
AssemblyASM20995v1 · Chromosomehaploid
Genome composition3 698 419 bp · 40,5% GCAgathobacter rectalis M104/1
Signal transduction countsGenes 73 · HK 30 · RR 41CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key