1 Response_reg#1
4-108 aa · 105 aa · 43.6% of protein
Raw token
Response_reg:4:6.43e-18:108:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ERE_RS08655
Response regulator LytTR family
Agathobacter rectalis M104/1 · GCF_000209955
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000209955#ERE_RS08655Stable P2CS identifier used across views.
GenomeGCF_000209955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 241 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-234 aa · 95 aa · 39.4% of protein
Raw token
LytTR:140:0.00000000000000136:234:100:98- Raw architecture: Response_reg:4:6.43e-18:108:107:111#LytTR:140:0.00000000000000136:234:100:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000209955::NC_021044.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1860571-1861296Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERE_18210RefSeq proteinWP_015568797.1
Context group ID
GCF_000209955::NC_021044.1::G00021Context members
ERE_RS08655
Partner locus tags
ERE_RS08655
Partner old locus tags
ERE_18210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015568797.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagERE_RS08655Primary locus identifier stored in the genes table.
Old locus tagERE_18210Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021044.1Sequence record reported by the local genomic context database.
Genomic interval1 860 571-1 861 296 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 860 571-1 861 296 ntGCF_000209955::NC_021044.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209955::NC_021044.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021044.1All displayed genes belong to this local TCS context.
Neighborhood span1 860 571-1 861 296 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 860 571 nt1 861 296 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ERE_RS08655GCF_000209955#ERE_RS08655
RRLytTRCurrent focus
1 860 571-1 861 296 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209955#ERE_RS08655The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862963
Simplified PFAM architecture for RROC_0862963
PFAM domain coverage: 198 / 241 aa (82.2%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-109] | LytTR[142-233]
- Domain count: 2
- Matched identifier: RROC_0862963
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109 ; LytTR 142-233 ; LytTR 142-233
Cluster members and taxonomy
Representative gene: GCF_000209955#ERE_RS08655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 317 · GCF_000209955
AssemblyASM20995v1 · Chromosomehaploid
Genome composition3 698 419 bp · 40,5% GCAgathobacter rectalis M104/1
Signal transduction countsGenes 73 · HK 30 · RR 41CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key