1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:3.32e-30:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ERE_RS08555
Response regulator OmpR family
Agathobacter rectalis M104/1 · GCF_000209955
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209955#ERE_RS08555Stable P2CS identifier used across views.
GenomeGCF_000209955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 223 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-216 aa · 72 aa · 32.3% of protein
Raw token
Trans_reg_C:145:3.61e-19:216:77:77- Raw architecture: Response_reg:4:3.32e-30:112:111:111#Trans_reg_C:145:3.61e-19:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209955::NC_021044.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1837929-1839913Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERE_18000RefSeq proteinWP_015568785.1
Context group ID
GCF_000209955::NC_021044.1::G00020Context members
ERE_RS08550ERE_RS08555
Partner locus tags
ERE_RS08550ERE_RS08555
Partner old locus tags
ERE_17990ERE_18000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015568785.1Primary protein accession used for annex mappings.
UniProt accessionA0A5S4VMT8Primary UniProt accession resolved in the annex database.
UniProt IDA0A5S4VMT8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagERE_RS08555Primary locus identifier stored in the genes table.
Old locus tagERE_18000Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021044.1Sequence record reported by the local genomic context database.
Genomic interval1 839 242-1 839 913 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 837 929-1 839 913 ntGCF_000209955::NC_021044.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209955::NC_021044.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021044.1All displayed genes belong to this local TCS context.
Neighborhood span1 837 929-1 839 913 nt1 985 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 837 929 nt1 839 913 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ERE_RS08550GCF_000209955#ERE_RS08550
HKClassic
1 837 929-1 839 203 nt · Reverse (-)
ERE_RS08555GCF_000209955#ERE_RS08555
RROmpRCurrent focus
1 839 242-1 839 913 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209955#ERE_RS08555The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587877
Simplified PFAM architecture for RROC_1587877
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-216]
- Domain count: 2
- Matched identifier: RROC_1587877
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-216 ; Trans_reg_C 145-216
Cluster members and taxonomy
Representative gene: GCF_000209955#ERE_RS08555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 317 · GCF_000209955
AssemblyASM20995v1 · Chromosomehaploid
Genome composition3 698 419 bp · 40,5% GCAgathobacter rectalis M104/1
Signal transduction countsGenes 73 · HK 30 · RR 41CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key