1 HAMP#1
50-120 aa · 71 aa · 20.7% of protein
Raw token
HAMP:50:0.00000000000225:120:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ERE_RS06785
Histidine kinase, Classic
Agathobacter rectalis M104/1 · GCF_000209955
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209955#ERE_RS06785Stable P2CS identifier used across views.
GenomeGCF_000209955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 343 aa (71.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation3 items
2 HisKA#2
127-189 aa · 63 aa · 18.4% of protein
Raw token
HisKA:127:0.00000000000000394:189:63:643 HATPase_c#3
233-343 aa · 111 aa · 32.4% of protein
Raw token
HATPase_c:233:6.79e-29:343:111:109- Raw architecture: HAMP:50:0.00000000000225:120:71:69#HisKA:127:0.00000000000000394:189:63:64#HATPase_c:233:6.79e-29:343:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209955::NC_021044.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1464736-1466438Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERE_14270RefSeq proteinWP_015515840.1
Context group ID
GCF_000209955::NC_021044.1::G00016Context members
ERE_RS06785ERE_RS06790
Partner locus tags
ERE_RS06785ERE_RS06790
Partner old locus tags
ERE_14270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015515840.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagERE_RS06785Primary locus identifier stored in the genes table.
Old locus tagERE_14270Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021044.1Sequence record reported by the local genomic context database.
Genomic interval1 464 736-1 465 767 nt1 032 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 464 736-1 466 438 ntGCF_000209955::NC_021044.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209955::NC_021044.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021044.1All displayed genes belong to this local TCS context.
Neighborhood span1 464 736-1 466 438 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 464 736 nt1 466 438 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ERE_RS06785GCF_000209955#ERE_RS06785
HKClassicCurrent focus
1 464 736-1 465 767 nt · Reverse (-)
ERE_RS06790GCF_000209955#ERE_RS06790
RROmpR
1 465 767-1 466 438 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209935#EUR_RS02535Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2827820
Simplified PFAM architecture for HKOC_2827820
PFAM domain coverage: 224 / 343 aa (65.3%)
1 aa343 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[68-120] | HisKA[126-188] | HATPase_c[235-342]
- Domain count: 3
- Matched identifier: HKOC_2827820
- Positioned domains: HAMP 68-120 ; HisKA 126-188 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_000209935#EUR_RS02535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 317 · GCF_000209955
AssemblyASM20995v1 · Chromosomehaploid
Genome composition3 698 419 bp · 40,5% GCAgathobacter rectalis M104/1
Signal transduction countsGenes 73 · HK 30 · RR 41CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key