1 Response_reg#1
4-118 aa · 115 aa · 27.4% of protein
Raw token
Response_reg:4:6.17e-30:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FPR_RS12680
Response regulator, unclassified
Faecalibacterium prausnitzii SL3/3 · GCF_000209855
ClassRRTypeunclassifiedLength420 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209855#FPR_RS12680Stable P2CS identifier used across views.
GenomeGCF_000209855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length420 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage196 / 420 aa (46.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa420 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
327-368 aa · 42 aa · 10.0% of protein
Raw token
HTH_AraC:327:0.00000000838:368:42:423 HTH_AraC#3
380-418 aa · 39 aa · 9.3% of protein
Raw token
HTH_AraC:380:0.000000000614:418:39:42- Raw architecture: Response_reg:4:6.17e-30:118:115:111#HTH_AraC:327:0.00000000838:368:42:42#HTH_AraC:380:0.000000000614:418:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209855::NC_021020.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2556647-2559701Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFPR_25270RefSeq proteinWP_015538148.1
Context group ID
GCF_000209855::NC_021020.1::G00031Context members
FPR_RS12680FPR_RS12685
Partner locus tags
FPR_RS12680FPR_RS12685
Partner old locus tags
FPR_25270FPR_25280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015538148.1Primary protein accession used for annex mappings.
UniProt accessionD4KCV3Primary UniProt accession resolved in the annex database.
UniProt IDD4KCV3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFPR_RS12680Primary locus identifier stored in the genes table.
Old locus tagFPR_25270Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021020.1Sequence record reported by the local genomic context database.
Genomic interval2 556 647-2 557 909 nt1 263 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 556 647-2 559 701 ntGCF_000209855::NC_021020.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209855::NC_021020.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021020.1All displayed genes belong to this local TCS context.
Neighborhood span2 556 647-2 559 701 nt3 055 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 556 647 nt2 559 701 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FPR_RS12680GCF_000209855#FPR_RS12680
RRunclassifiedCurrent focus
2 556 647-2 557 909 nt · Reverse (-)
FPR_RS12685GCF_000209855#FPR_RS12685
HKClassic
2 557 884-2 559 701 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209855#FPR_RS12680The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0355686
Simplified PFAM architecture for RROC_0355686
PFAM domain coverage: 194 / 420 aa (46.2%)
1 aa420 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-116] | HTH_AraC[327-367] | HTH_AraC[379-418]
- Domain count: 3
- Matched identifier: RROC_0355686
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_AraC 327-367 ; HTH_AraC 327-367 ; HTH_AraC 379-418 ; HTH_AraC 379-418
Cluster members and taxonomy
Representative gene: GCF_000209855#FPR_RS12680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 322 · GCF_000209855
AssemblyASM20985v1 · Chromosomehaploid
Genome composition3 214 418 bp · 55,5% GCFaecalibacterium prausnitzii SL3/3
Signal transduction countsGenes 60 · HK 29 · RR 30CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key