1 HisKA#1
89-152 aa · 64 aa · 20.8% of protein
Raw token
HisKA:89:0.0000000388:152:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FPR_RS00325
Histidine kinase, Classic
Faecalibacterium prausnitzii SL3/3 · GCF_000209855
ClassHKTypeClassicLength307 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209855#FPR_RS00325Stable P2CS identifier used across views.
GenomeGCF_000209855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length307 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 307 aa (56.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa307 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
199-306 aa · 108 aa · 35.2% of protein
Raw token
HATPase_c:199:1.66e-30:306:108:109- Raw architecture: HisKA:89:0.0000000388:152:64:64#HATPase_c:199:1.66e-30:306:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209855::NC_021020.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51943-53570Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFPR_00720RefSeq proteinWP_015536534.1
Context group ID
GCF_000209855::NC_021020.1::G00002Context members
FPR_RS00325FPR_RS00330
Partner locus tags
FPR_RS00325FPR_RS00330
Partner old locus tags
FPR_00720FPR_00730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015536534.1Primary protein accession used for annex mappings.
UniProt accessionD4K6S6Primary UniProt accession resolved in the annex database.
UniProt IDD4K6S6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFPR_RS00325Primary locus identifier stored in the genes table.
Old locus tagFPR_00720Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021020.1Sequence record reported by the local genomic context database.
Genomic interval51 943-52 866 nt924 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 943-53 570 ntGCF_000209855::NC_021020.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209855::NC_021020.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021020.1All displayed genes belong to this local TCS context.
Neighborhood span51 943-53 570 nt1 628 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 943 nt53 570 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FPR_RS00325GCF_000209855#FPR_RS00325
HKClassicCurrent focus
51 943-52 866 nt · Reverse (-)
FPR_RS00330GCF_000209855#FPR_RS00330
RROmpR
52 869-53 570 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209855#FPR_RS00325The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2880554
Simplified PFAM architecture for HKOC_2880554
PFAM domain coverage: 171 / 307 aa (55.7%)
1 aa307 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[89-152] | HATPase_c[199-305]
- Domain count: 2
- Matched identifier: HKOC_2880554
- Positioned domains: HisKA 89-152 ; HATPase_c 199-305
Cluster members and taxonomy
Representative gene: GCF_000209855#FPR_RS00325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 322 · GCF_000209855
AssemblyASM20985v1 · Chromosomehaploid
Genome composition3 214 418 bp · 55,5% GCFaecalibacterium prausnitzii SL3/3
Signal transduction countsGenes 60 · HK 29 · RR 30CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key