1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.000000122:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FPR_RS00580
Histidine kinase, Classic
Faecalibacterium prausnitzii SL3/3 · GCF_000209855
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209855#FPR_RS00580Stable P2CS identifier used across views.
GenomeGCF_000209855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 343 aa (49.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-343 aa · 103 aa · 30.0% of protein
Raw token
HATPase_c:241:2.18e-28:343:103:109- Raw architecture: HisKA:123:0.000000122:189:67:64#HATPase_c:241:2.18e-28:343:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209855::NC_021020.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span97623-99343Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFPR_01230RefSeq proteinWP_015536574.1
Context group ID
GCF_000209855::NC_021020.1::G00003Context members
FPR_RS00575FPR_RS00580
Partner locus tags
FPR_RS00575FPR_RS00580
Partner old locus tags
FPR_01230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015536574.1Primary protein accession used for annex mappings.
UniProt accessionD4K6X0Primary UniProt accession resolved in the annex database.
UniProt IDD4K6X0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFPR_RS00580Primary locus identifier stored in the genes table.
Old locus tagFPR_01230Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021020.1Sequence record reported by the local genomic context database.
Genomic interval98 312-99 343 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span97 623-99 343 ntGCF_000209855::NC_021020.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209855::NC_021020.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021020.1All displayed genes belong to this local TCS context.
Neighborhood span97 623-99 343 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
97 623 nt99 343 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FPR_RS00575GCF_000209855#FPR_RS00575
RROmpR
97 623-98 315 nt · Forward (+)
FPR_RS00580GCF_000209855#FPR_RS00580
HKClassicCurrent focus
98 312-99 343 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209855#FPR_RS00580The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2827818
Simplified PFAM architecture for HKOC_2827818
PFAM domain coverage: 174 / 343 aa (50.7%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[235-342]
- Domain count: 2
- Matched identifier: HKOC_2827818
- Positioned domains: HisKA 124-189 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_000209855#FPR_RS00580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 322 · GCF_000209855
AssemblyASM20985v1 · Chromosomehaploid
Genome composition3 214 418 bp · 55,5% GCFaecalibacterium prausnitzii SL3/3
Signal transduction countsGenes 60 · HK 29 · RR 30CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key