1 Response_reg#1
6-114 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:6:2.65e-23:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FPR_RS12055
Response regulator OmpR family
Faecalibacterium prausnitzii SL3/3 · GCF_000209855
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000209855#FPR_RS12055Stable P2CS identifier used across views.
GenomeGCF_000209855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 223 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:8.48e-24:221:75:77- Raw architecture: Response_reg:6:2.65e-23:114:110:111#Trans_reg_C:148:8.48e-24:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000209855::NC_021020.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2423224-2423895Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFPR_24070RefSeq proteinWP_015538084.1
Context group ID
GCF_000209855::NC_021020.1::G00029Context members
FPR_RS12055
Partner locus tags
FPR_RS12055
Partner old locus tags
FPR_24070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015538084.1Primary protein accession used for annex mappings.
UniProt accessionA0A174LCR3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174LCR3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFPR_RS12055Primary locus identifier stored in the genes table.
Old locus tagFPR_24070Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021020.1Sequence record reported by the local genomic context database.
Genomic interval2 423 224-2 423 895 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 423 224-2 423 895 ntGCF_000209855::NC_021020.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209855::NC_021020.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021020.1All displayed genes belong to this local TCS context.
Neighborhood span2 423 224-2 423 895 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 423 224 nt2 423 895 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FPR_RS12055GCF_000209855#FPR_RS12055
RROmpRCurrent focus
2 423 224-2 423 895 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209855#FPR_RS12055The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587873
Simplified PFAM architecture for RROC_1587873
PFAM domain coverage: 184 / 223 aa (82.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1587873
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_000209855#FPR_RS12055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 322 · GCF_000209855
AssemblyASM20985v1 · Chromosomehaploid
Genome composition3 214 418 bp · 55,5% GCFaecalibacterium prausnitzii SL3/3
Signal transduction countsGenes 60 · HK 29 · RR 30CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key