1 Response_reg#1
39-117 aa · 79 aa · 32.9% of protein
Raw token
Response_reg:39:0.000000139:117:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS15535
Response regulator LytTR family
Ruminococcus sp. SR1/5 · GCF_000209835
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000209835#CK1_RS15535Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 240 aa (71.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.3% of protein
Raw token
LytTR:139:0.00000000000000109:230:98:98- Raw architecture: Response_reg:39:0.000000139:117:86:111#LytTR:139:0.00000000000000109:230:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000209835::NC_021014.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3092854-3093576Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_35260RefSeq proteinWP_015527097.1
Context group ID
GCF_000209835::NC_021014.1::G00031Context members
CK1_RS15535
Partner locus tags
CK1_RS15535
Partner old locus tags
CK1_35260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015527097.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS15535Primary locus identifier stored in the genes table.
Old locus tagCK1_35260Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval3 092 854-3 093 576 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 092 854-3 093 576 ntGCF_000209835::NC_021014.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span3 092 854-3 093 576 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 092 854 nt3 093 576 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CK1_RS15535GCF_000209835#CK1_RS15535
RRLytTRCurrent focus
3 092 854-3 093 576 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS15535The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0882440
Simplified PFAM architecture for RROC_0882440
PFAM domain coverage: 90 / 240 aa (37.5%)
1 aa240 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[139-228]
- Domain count: 1
- Matched identifier: RROC_0882440
- Positioned domains: LytTR 139-228 ; LytTR 139-228
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS15535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key