1 HAMP#1
300-376 aa · 77 aa · 12.4% of protein
Raw token
HAMP:300:0.0000000762:376:77:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS15380
Histidine kinase, Classic
Ruminococcus sp. SR1/5 · GCF_000209835
ClassHKTypeClassicLength620 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209835#CK1_RS15380Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length620 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 620 aa (41.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa620 aa
Domain-by-domain annotation3 items
2 His_kinase#2
393-472 aa · 80 aa · 12.9% of protein
Raw token
His_kinase:393:4.48e-24:472:80:803 HATPase_c#3
492-593 aa · 102 aa · 16.5% of protein
Raw token
HATPase_c:492:0.000000000342:593:103:109- Raw architecture: HAMP:300:0.0000000762:376:77:69#His_kinase:393:4.48e-24:472:80:80#HATPase_c:492:0.000000000342:593:103:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209835::NC_021014.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3059066-3062151Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_34900RefSeq proteinWP_015527071.1
Context group ID
GCF_000209835::NC_021014.1::G00030Context members
CK1_RS15375CK1_RS15380
Partner locus tags
CK1_RS15375CK1_RS15380
Partner old locus tags
CK1_34900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015527071.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS15380Primary locus identifier stored in the genes table.
Old locus tagCK1_34900Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval3 060 289-3 062 151 nt1 863 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 059 066-3 062 151 ntGCF_000209835::NC_021014.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span3 059 066-3 062 151 nt3 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 059 066 nt3 062 151 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK1_RS15375GCF_000209835#CK1_RS15375
RRunclassified
3 059 066-3 060 223 nt · Reverse (-)
CK1_RS15380GCF_000209835#CK1_RS15380
HKClassicCurrent focus
3 060 289-3 062 151 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS15380The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0972586
Simplified PFAM architecture for HKOC_0972586
PFAM domain coverage: 181 / 620 aa (29.2%)
1 aa620 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[394-471] | HATPase_c[492-594]
- Domain count: 2
- Matched identifier: HKOC_0972586
- Positioned domains: His_kinase 394-471 ; HATPase_c 492-594
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS15380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key