1 Response_reg#1
6-116 aa · 111 aa · 49.1% of protein
Raw token
Response_reg:6:1.63e-32:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS14840
Response regulator OmpR family
Ruminococcus sp. SR1/5 · GCF_000209835
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209835#CK1_RS14840Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:149:2.73e-31:222:77:77- Raw architecture: Response_reg:6:1.63e-32:116:112:111#Trans_reg_C:149:2.73e-31:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209835::NC_021014.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2948862-2951053Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_33660RefSeq proteinWP_015526981.1
Context group ID
GCF_000209835::NC_021014.1::G00029Context members
CK1_RS14840CK1_RS14845
Partner locus tags
CK1_RS14840CK1_RS14845
Partner old locus tags
CK1_33660CK1_33670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015526981.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WB56Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WB56_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS14840Primary locus identifier stored in the genes table.
Old locus tagCK1_33660Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval2 948 862-2 949 542 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 948 862-2 951 053 ntGCF_000209835::NC_021014.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span2 948 862-2 951 053 nt2 192 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 948 862 nt2 951 053 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK1_RS14840GCF_000209835#CK1_RS14840
RROmpRCurrent focus
2 948 862-2 949 542 nt · Forward (+)
CK1_RS14845GCF_000209835#CK1_RS14845
HKClassic
2 949 539-2 951 053 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS14840The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408922
Simplified PFAM architecture for RROC_1408922
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[150-222]
- Domain count: 2
- Matched identifier: RROC_1408922
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 150-222 ; Trans_reg_C 150-222
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS14840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key