1 HisKA#1
172-242 aa · 71 aa · 17.9% of protein
Raw token
HisKA:172:0.000000000000105:242:71:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS12700
Histidine kinase, Classic
Ruminococcus sp. SR1/5 · GCF_000209835
ClassHKTypeClassicLength396 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209835#CK1_RS12700Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length396 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 396 aa (45.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa396 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
288-395 aa · 108 aa · 27.3% of protein
Raw token
HATPase_c:288:8.22e-31:395:109:109- Raw architecture: HisKA:172:0.000000000000105:242:71:64#HATPase_c:288:8.22e-31:395:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209835::NC_021014.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2547181-2549085Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000209835::NC_021014.1::G00026Context members
CK1_RS12695CK1_RS12700
Partner locus tags
CK1_RS12695CK1_RS12700
Partner old locus tags
CK1_28930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288161968.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS12700Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval2 547 895-2 549 085 nt1 191 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 547 181-2 549 085 ntGCF_000209835::NC_021014.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span2 547 181-2 549 085 nt1 905 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 547 181 nt2 549 085 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK1_RS12695GCF_000209835#CK1_RS12695
RROmpR
2 547 181-2 547 894 nt · Reverse (-)
CK1_RS12700GCF_000209835#CK1_RS12700
HKClassicCurrent focus
2 547 895-2 549 085 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS12700The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2479005
Simplified PFAM architecture for HKOC_2479005
PFAM domain coverage: 177 / 396 aa (44.7%)
1 aa396 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[172-242] | HATPase_c[289-394]
- Domain count: 2
- Matched identifier: HKOC_2479005
- Positioned domains: HisKA 172-242 ; HATPase_c 289-394
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS12700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key