1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:5.19e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS12485
Response regulator OmpR family
Ruminococcus sp. SR1/5 · GCF_000209835
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209835#CK1_RS12485Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:8.81e-33:227:77:77- Raw architecture: Response_reg:4:5.19e-32:113:111:111#Trans_reg_C:151:8.81e-33:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209835::NC_021014.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2496628-2498359Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_28500RefSeq proteinWP_015526575.1
Context group ID
GCF_000209835::NC_021014.1::G00025Context members
CK1_RS12480CK1_RS12485
Partner locus tags
CK1_RS12480CK1_RS12485
Partner old locus tags
CK1_28500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015526575.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WF40Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WF40_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS12485Primary locus identifier stored in the genes table.
Old locus tagCK1_28500Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval2 497 670-2 498 359 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 496 628-2 498 359 ntGCF_000209835::NC_021014.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span2 496 628-2 498 359 nt1 732 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 496 628 nt2 498 359 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK1_RS12480GCF_000209835#CK1_RS12480
HKClassic
2 496 628-2 497 677 nt · Forward (+)
CK1_RS12485GCF_000209835#CK1_RS12485
RROmpRCurrent focus
2 497 670-2 498 359 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS12485The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1247363
Simplified PFAM architecture for RROC_1247363
PFAM domain coverage: 187 / 229 aa (81.7%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1247363
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 151-227 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS12485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key