1 Response_reg#1
6-91 aa · 86 aa · 85.1% of protein
Raw token
Response_reg:6:3e-16:91:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS11035
Response regulator, CheY family
Ruminococcus sp. SR1/5 · GCF_000209835
ClassRRTypeCheYLength101 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209835#CK1_RS11035Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length101 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage86 / 101 aa (85.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa101 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:3e-16:91:87:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209835::NC_021014.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2203944-2205087Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000209835::NC_021014.1::G00021Context members
CK1_RS11030CK1_RS11035
Partner locus tags
CK1_RS11030CK1_RS11035
Partner old locus tags
CK1_25190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_306288880.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS11035Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval2 204 782-2 205 087 nt306 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 203 944-2 205 087 ntGCF_000209835::NC_021014.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span2 203 944-2 205 087 nt1 144 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 203 944 nt2 205 087 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK1_RS11030GCF_000209835#CK1_RS11030
HKClassic
2 203 944-2 204 780 nt · Forward (+)
CK1_RS11035GCF_000209835#CK1_RS11035
RRCheYCurrent focus
2 204 782-2 205 087 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS11035The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2471447
Simplified PFAM architecture for RROC_2471447
PFAM domain coverage: 86 / 101 aa (85.1%)
1 aa101 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-90]
- Domain count: 1
- Matched identifier: RROC_2471447
- Positioned domains: Response_reg 5-90 ; Response_reg 5-90
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS11035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key