1 sCache_like#1
31-122 aa · 92 aa · 16.7% of protein
Raw token
sCache_like:31:0.0000000834:122:99:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS10840
Histidine kinase, Classic
Ruminococcus sp. SR1/5 · GCF_000209835
ClassHKTypeClassicLength551 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000209835#CK1_RS10840Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length551 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage268 / 551 aa (48.6%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa551 aa
Domain-by-domain annotation3 items
2 HisKA#2
323-388 aa · 66 aa · 12.0% of protein
Raw token
HisKA:323:1.63e-18:388:66:643 HATPase_c#3
432-541 aa · 110 aa · 20.0% of protein
Raw token
HATPase_c:432:9.11e-31:541:110:109- Raw architecture: sCache_like:31:0.0000000834:122:99:114#HisKA:323:1.63e-18:388:66:64#HATPase_c:432:9.11e-31:541:110:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000209835::NC_021014.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2161127-2162782Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_24790RefSeq proteinWP_015526282.1
Context group ID
GCF_000209835::NC_021014.1::G00020Context members
CK1_RS10840
Partner locus tags
CK1_RS10840
Partner old locus tags
CK1_24790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015526282.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS10840Primary locus identifier stored in the genes table.
Old locus tagCK1_24790Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval2 161 127-2 162 782 nt1 656 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 161 127-2 162 782 ntGCF_000209835::NC_021014.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span2 161 127-2 162 782 nt1 656 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 161 127 nt2 162 782 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CK1_RS10840GCF_000209835#CK1_RS10840
HKClassicCurrent focus
2 161 127-2 162 782 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302305#G5A91_RS06635Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1259193
Simplified PFAM architecture for HKOC_1259193
PFAM domain coverage: 174 / 560 aa (31.1%)
1 aa560 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[332-397] | HATPase_c[444-551]
- Domain count: 2
- Matched identifier: HKOC_1259193
- Positioned domains: HisKA 332-397 ; HATPase_c 444-551
Cluster members and taxonomy
Representative gene: GCF_013302305#G5A91_RS06635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key