1 HAMP#1
287-356 aa · 70 aa · 12.0% of protein
Raw token
HAMP:287:0.000052:356:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS08925
Histidine kinase, Classic
Ruminococcus sp. SR1/5 · GCF_000209835
ClassHKTypeClassicLength581 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209835#CK1_RS08925Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length581 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 581 aa (43.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa581 aa
Domain-by-domain annotation3 items
2 His_kinase#2
371-449 aa · 79 aa · 13.6% of protein
Raw token
His_kinase:371:4.69e-28:449:80:803 HATPase_c#3
466-571 aa · 106 aa · 18.2% of protein
Raw token
HATPase_c:466:0.000083:571:119:109- Raw architecture: HAMP:287:0.000052:356:70:69#His_kinase:371:4.69e-28:449:80:80#HATPase_c:466:0.000083:571:119:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209835::NC_021014.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1744516-1746980Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000209835::NC_021014.1::G00015Context members
CK1_RS08925CK1_RS08930
Partner locus tags
CK1_RS08925CK1_RS08930
Partner old locus tags
CK1_20440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_092070120.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5CSP3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5CSP3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS08925Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval1 744 516-1 746 261 nt1 746 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 744 516-1 746 980 ntGCF_000209835::NC_021014.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span1 744 516-1 746 980 nt2 465 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 744 516 nt1 746 980 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK1_RS08925GCF_000209835#CK1_RS08925
HKClassicCurrent focus
1 744 516-1 746 261 nt · Forward (+)
CK1_RS08930GCF_000209835#CK1_RS08930
RRunclassified
1 746 258-1 746 980 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS08925The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1156652
Simplified PFAM architecture for HKOC_1156652
PFAM domain coverage: 79 / 581 aa (13.6%)
1 aa581 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[371-449]
- Domain count: 1
- Matched identifier: HKOC_1156652
- Positioned domains: His_kinase 371-449
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS08925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key