1 HisKA#1
22-72 aa · 51 aa · 22.8% of protein
Raw token
HisKA:22:0.0000052:72:51:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS07315
Histidine kinase, Classic
Ruminococcus sp. SR1/5 · GCF_000209835
ClassHKTypeClassicLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000209835#CK1_RS07315Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 224 aa (68.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
121-223 aa · 103 aa · 46.0% of protein
Raw token
HATPase_c:121:4.06e-33:223:106:109- Raw architecture: HisKA:22:0.0000052:72:51:64#HATPase_c:121:4.06e-33:223:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000209835::NC_021014.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1402390-1403064Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_16760RefSeq proteinWP_015525627.1
Context group ID
GCF_000209835::NC_021014.1::G00013Context members
CK1_RS07315
Partner locus tags
CK1_RS07315
Partner old locus tags
CK1_16760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015525627.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS07315Primary locus identifier stored in the genes table.
Old locus tagCK1_16760Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval1 402 390-1 403 064 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 402 390-1 403 064 ntGCF_000209835::NC_021014.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span1 402 390-1 403 064 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 402 390 nt1 403 064 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CK1_RS07315GCF_000209835#CK1_RS07315
HKClassicCurrent focus
1 402 390-1 403 064 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS07315The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2927468
Simplified PFAM architecture for HKOC_2927468
PFAM domain coverage: 103 / 224 aa (46.0%)
1 aa224 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[121-223]
- Domain count: 1
- Matched identifier: HKOC_2927468
- Positioned domains: HATPase_c 121-223
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS07315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key