1 HAMP#1
83-150 aa · 68 aa · 18.0% of protein
Raw token
HAMP:83:0.00000000654:150:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS03595
Histidine kinase, Classic
Ruminococcus sp. SR1/5 · GCF_000209835
ClassHKTypeClassicLength378 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209835#CK1_RS03595Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length378 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 378 aa (61.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa378 aa
Domain-by-domain annotation3 items
2 HisKA#2
162-222 aa · 61 aa · 16.1% of protein
Raw token
HisKA:162:0.0000000000244:222:61:643 HATPase_c#3
275-377 aa · 103 aa · 27.2% of protein
Raw token
HATPase_c:275:3.94e-26:377:106:109- Raw architecture: HAMP:83:0.00000000654:150:68:69#HisKA:162:0.0000000000244:222:61:64#HATPase_c:275:3.94e-26:377:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209835::NC_021014.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span715837-717929Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_08330RefSeq proteinWP_243269371.1
Context group ID
GCF_000209835::NC_021014.1::G00008Context members
CK1_RS03590CK1_RS03595
Partner locus tags
CK1_RS03590CK1_RS03595
Partner old locus tags
CK1_08330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243269371.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS03595Primary locus identifier stored in the genes table.
Old locus tagCK1_08330Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval716 793-717 929 nt1 137 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span715 837-717 929 ntGCF_000209835::NC_021014.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span715 837-717 929 nt2 093 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
715 837 nt717 929 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK1_RS03590GCF_000209835#CK1_RS03590
RROmpR
715 837-716 511 nt · Forward (+)
CK1_RS03595GCF_000209835#CK1_RS03595
HKClassicCurrent focus
716 793-717 929 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020553125#LI091_RS02605Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1691656
Simplified PFAM architecture for HKOC_1691656
PFAM domain coverage: 213 / 473 aa (45.0%)
1 aa473 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[195-244] | HisKA[257-316] | HATPase_c[370-472]
- Domain count: 3
- Matched identifier: HKOC_1691656
- Positioned domains: HAMP 195-244 ; HisKA 257-316 ; HATPase_c 370-472
Cluster members and taxonomy
Representative gene: GCF_020553125#LI091_RS02605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key