1 Response_reg#1
6-121 aa · 116 aa · 43.3% of protein
Raw token
Response_reg:6:1.82e-18:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS00905
Response regulator Spo0A family
Ruminococcus sp. SR1/5 · GCF_000209835
ClassRRTypeSpo0ALength268 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000209835#CK1_RS00905Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 268 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa268 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
155-258 aa · 104 aa · 38.8% of protein
Raw token
Spo0A_C:155:1.87e-65:258:104:104- Raw architecture: Response_reg:6:1.82e-18:121:116:111#Spo0A_C:155:1.87e-65:258:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000209835::NC_021014.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span175140-175946Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_02050RefSeq proteinWP_015524464.1
Context group ID
GCF_000209835::NC_021014.1::G00006Context members
CK1_RS00905
Partner locus tags
CK1_RS00905
Partner old locus tags
CK1_02050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015524464.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WBK7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WBK7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS00905Primary locus identifier stored in the genes table.
Old locus tagCK1_02050Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval175 140-175 946 nt807 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span175 140-175 946 ntGCF_000209835::NC_021014.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span175 140-175 946 nt807 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
175 140 nt175 946 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CK1_RS00905GCF_000209835#CK1_RS00905
RRSpo0ACurrent focus
175 140-175 946 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS00905The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0619469
Simplified PFAM architecture for RROC_0619469
PFAM domain coverage: 220 / 268 aa (82.1%)
1 aa268 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-121] | Spo0A_C[155-258]
- Domain count: 2
- Matched identifier: RROC_0619469
- Positioned domains: Response_reg 6-121 ; Response_reg 6-121 ; Spo0A_C 155-258 ; Spo0A_C 155-258
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS00905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key