1 Response_reg#1
5-121 aa · 117 aa · 43.7% of protein
Raw token
Response_reg:5:2.19e-21:121:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS00445
Response regulator, FrzZ family
Ruminococcus sp. SR1/5 · GCF_000209835
ClassRRTypeFrzZLength268 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209835#CK1_RS00445Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage234 / 268 aa (87.3%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa268 aa
Domain-by-domain annotation2 items
2 Response_reg#2
149-265 aa · 117 aa · 43.7% of protein
Raw token
Response_reg:149:2.05e-31:265:117:111- Raw architecture: Response_reg:5:2.19e-21:121:117:111#Response_reg:149:2.05e-31:265:117:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209835::NC_021014.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79635-82840Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_01050RefSeq proteinWP_015524386.1
Context group ID
GCF_000209835::NC_021014.1::G00003Context members
CK1_RS00440CK1_RS00445
Partner locus tags
CK1_RS00440CK1_RS00445
Partner old locus tags
CK1_01040CK1_01050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015524386.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS00445Primary locus identifier stored in the genes table.
Old locus tagCK1_01050Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval82 034-82 840 nt807 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 635-82 840 ntGCF_000209835::NC_021014.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span79 635-82 840 nt3 206 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 635 nt82 840 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK1_RS00440GCF_000209835#CK1_RS00440
HKClassic
79 635-82 034 nt · Forward (+)
CK1_RS00445GCF_000209835#CK1_RS00445
RRFrzZCurrent focus
82 034-82 840 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS00445The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0619468
Simplified PFAM architecture for RROC_0619468
PFAM domain coverage: 232 / 268 aa (86.6%)
1 aa268 aa
Response_regResponse_reg
- Simplified architecture: Response_reg + Response_reg
- Raw architecture: Response_reg[5-120] | Response_reg[149-264]
- Domain count: 2
- Matched identifier: RROC_0619468
- Positioned domains: Response_reg 5-120 ; Response_reg 5-120 ; Response_reg 149-264 ; Response_reg 149-264
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS00445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key