1 PAS_3#1
168-256 aa · 89 aa · 11.1% of protein
Raw token
PAS_3:168:5.27e-21:256:89:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS00440
Histidine kinase, Classic
Ruminococcus sp. SR1/5 · GCF_000209835
ClassHKTypeClassicLength799 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209835#CK1_RS00440Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_c
Protein length799 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage271 / 799 aa (33.9%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa799 aa
Domain-by-domain annotation3 items
2 HisKA#2
558-624 aa · 67 aa · 8.4% of protein
Raw token
HisKA:558:6.1e-16:624:67:643 HATPase_c#3
671-785 aa · 115 aa · 14.4% of protein
Raw token
HATPase_c:671:1.4e-30:785:115:109- Raw architecture: PAS_3:168:5.27e-21:256:89:89#HisKA:558:6.1e-16:624:67:64#HATPase_c:671:1.4e-30:785:115:109
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209835::NC_021014.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79635-82840Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_01040RefSeq proteinWP_015524385.1
Context group ID
GCF_000209835::NC_021014.1::G00003Context members
CK1_RS00440CK1_RS00445
Partner locus tags
CK1_RS00440CK1_RS00445
Partner old locus tags
CK1_01040CK1_01050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015524385.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS00440Primary locus identifier stored in the genes table.
Old locus tagCK1_01040Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval79 635-82 034 nt2 400 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 635-82 840 ntGCF_000209835::NC_021014.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span79 635-82 840 nt3 206 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 635 nt82 840 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK1_RS00440GCF_000209835#CK1_RS00440
HKClassicCurrent focus
79 635-82 034 nt · Forward (+)
CK1_RS00445GCF_000209835#CK1_RS00445
RRFrzZ
82 034-82 840 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS00440The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0557711
Simplified PFAM architecture for HKOC_0557711
PFAM domain coverage: 274 / 799 aa (34.3%)
1 aa799 aa
PAS_3HisKAHATPase_c
- Simplified architecture: PAS_3 + HisKA + HATPase_c
- Raw architecture: PAS_3[167-256] | HisKA[558-624] | HATPase_c[671-787]
- Domain count: 3
- Matched identifier: HKOC_0557711
- Positioned domains: PAS_3 167-256 ; HisKA 558-624 ; HATPase_c 671-787
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS00440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key