1 HAMP#1
144-211 aa · 68 aa · 15.4% of protein
Raw token
HAMP:144:0.00000017:211:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS18645
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000186525
ClassHKTypeClassicLength442 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000186525#HMPREF9488_RS18645Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length442 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage231 / 442 aa (52.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
231-296 aa · 66 aa · 14.9% of protein
Raw token
HisKA:231:0.000000266:296:66:643 HATPase_c#3
342-438 aa · 97 aa · 21.9% of protein
Raw token
HATPase_c:342:0.00000000000495:438:105:109- Raw architecture: HAMP:144:0.00000017:211:68:69#HisKA:231:0.000000266:296:66:64#HATPase_c:342:0.00000000000495:438:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000186525::NZ_GL636586.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42027-44008Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_03687RefSeq proteinWP_008790769.1
Context group ID
GCF_000186525::NZ_GL636586.1::G00038Context members
HMPREF9488_RS18645HMPREF9488_RS18650
Partner locus tags
HMPREF9488_RS18645HMPREF9488_RS18650
Partner old locus tags
HMPREF9488_03687HMPREF9488_03688
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008790769.1Primary protein accession used for annex mappings.
UniProt accessionE7GFZ4Primary UniProt accession resolved in the annex database.
UniProt IDE7GFZ4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS18645Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_03687Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636586.1Sequence record reported by the local genomic context database.
Genomic interval42 027-43 355 nt1 329 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 027-44 008 ntGCF_000186525::NZ_GL636586.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636586.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636586.1All displayed genes belong to this local TCS context.
Neighborhood span42 027-44 008 nt1 982 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 027 nt44 008 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9488_RS18645GCF_000186525#HMPREF9488_RS18645
HKClassicCurrent focus
42 027-43 355 nt · Reverse (-)
HMPREF9488_RS18650GCF_000186525#HMPREF9488_RS18650
RROmpR
43 352-44 008 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS18645The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2051524
Simplified PFAM architecture for HKOC_2051524
PFAM domain coverage: 161 / 442 aa (36.4%)
1 aa442 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[232-295] | HATPase_c[342-438]
- Domain count: 2
- Matched identifier: HKOC_2051524
- Positioned domains: HisKA 232-295 ; HATPase_c 342-438
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS18645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key