1 HAMP#1
297-365 aa · 69 aa · 11.7% of protein
Raw token
HAMP:297:0.00000000000000235:365:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS00180
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000186525
ClassHKTypeClassicLength590 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000186525#HMPREF9488_RS00180Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length590 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 590 aa (38.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
384-448 aa · 65 aa · 11.0% of protein
Raw token
HisKA:384:0.0000000000000105:448:65:643 HATPase_c#3
497-587 aa · 91 aa · 15.4% of protein
Raw token
HATPase_c:497:0.00000000000104:587:99:109- Raw architecture: HAMP:297:0.00000000000000235:365:69:69#HisKA:384:0.0000000000000105:448:65:64#HATPase_c:497:0.00000000000104:587:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000186525::NZ_GL636577.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33822-36264Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_00036RefSeq proteinWP_017143956.1
Context group ID
GCF_000186525::NZ_GL636577.1::G00002Context members
HMPREF9488_RS00175HMPREF9488_RS00180
Partner locus tags
HMPREF9488_RS00175HMPREF9488_RS00180
Partner old locus tags
HMPREF9488_00035HMPREF9488_00036
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_017143956.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS00180Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_00036Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636577.1Sequence record reported by the local genomic context database.
Genomic interval34 492-36 264 nt1 773 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 822-36 264 ntGCF_000186525::NZ_GL636577.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636577.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636577.1All displayed genes belong to this local TCS context.
Neighborhood span33 822-36 264 nt2 443 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 822 nt36 264 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9488_RS00175GCF_000186525#HMPREF9488_RS00175
RROmpR
33 822-34 502 nt · Forward (+)
HMPREF9488_RS00180GCF_000186525#HMPREF9488_RS00180
HKClassicCurrent focus
34 492-36 264 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS00180The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1110172
Simplified PFAM architecture for HKOC_1110172
PFAM domain coverage: 209 / 590 aa (35.4%)
1 aa590 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[314-365] | HisKA[384-448] | HATPase_c[495-586]
- Domain count: 3
- Matched identifier: HKOC_1110172
- Positioned domains: HAMP 314-365 ; HisKA 384-448 ; HATPase_c 495-586
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS00180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key