1 Response_reg#1
8-116 aa · 109 aa · 48.2% of protein
Raw token
Response_reg:8:0.0000000223:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS02020
Response regulator OmpR family
Coprobacillus cateniformis · GCF_000186525
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000186525#HMPREF9488_RS02020Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 226 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-215 aa · 68 aa · 30.1% of protein
Raw token
Trans_reg_C:148:0.00000000000027:215:68:77- Raw architecture: Response_reg:8:0.0000000223:116:112:111#Trans_reg_C:148:0.00000000000027:215:68:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000186525::NZ_GL636577.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span453705-454385Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_00415RefSeq proteinWP_008787536.1
Context group ID
GCF_000186525::NZ_GL636577.1::G00006Context members
HMPREF9488_RS02020
Partner locus tags
HMPREF9488_RS02020
Partner old locus tags
HMPREF9488_00415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008787536.1Primary protein accession used for annex mappings.
UniProt accessionE7G6M7Primary UniProt accession resolved in the annex database.
UniProt IDE7G6M7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS02020Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_00415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636577.1Sequence record reported by the local genomic context database.
Genomic interval453 705-454 385 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span453 705-454 385 ntGCF_000186525::NZ_GL636577.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636577.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636577.1All displayed genes belong to this local TCS context.
Neighborhood span453 705-454 385 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
453 705 nt454 385 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9488_RS02020GCF_000186525#HMPREF9488_RS02020
RROmpRCurrent focus
453 705-454 385 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS02020The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408801
Simplified PFAM architecture for RROC_1408801
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-115] | Trans_reg_C[149-223]
- Domain count: 2
- Matched identifier: RROC_1408801
- Positioned domains: Response_reg 8-115 ; Response_reg 8-115 ; Trans_reg_C 149-223 ; Trans_reg_C 149-223
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS02020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key