1 HisKA_3#1
155-224 aa · 70 aa · 19.7% of protein
Raw token
HisKA_3:155:7.29e-21:224:70:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFME1071_RS13385
Histidine kinase, Classic
Enterococcus faecium E1071 · GCF_000172655
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172655#EFME1071_RS13385Stable P2CS identifier used across views.
GenomeGCF_000172655Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 355 aa (45.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
262-351 aa · 90 aa · 25.4% of protein
Raw token
HATPase_c:262:1.18e-18:351:105:109- Raw architecture: HisKA_3:155:7.29e-21:224:70:68#HATPase_c:262:1.18e-18:351:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172655::NZ_ABQI01000060.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73646-75352Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEfmE1071_2079RefSeq proteinWP_002318624.1
Context group ID
GCF_000172655::NZ_ABQI01000060.1::G00007Context members
EFME1071_RS13380EFME1071_RS13385
Partner locus tags
EFME1071_RS13380EFME1071_RS13385
Partner old locus tags
EfmE1071_2078EfmE1071_2079
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002318624.1Primary protein accession used for annex mappings.
UniProt accessionA0A829FA85Primary UniProt accession resolved in the annex database.
UniProt IDA0A829FA85_ENTFCDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFME1071_RS13385Primary locus identifier stored in the genes table.
Old locus tagEfmE1071_2079Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABQI01000060.1Sequence record reported by the local genomic context database.
Genomic interval74 285-75 352 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 646-75 352 ntGCF_000172655::NZ_ABQI01000060.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172655::NZ_ABQI01000060.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABQI01000060.1All displayed genes belong to this local TCS context.
Neighborhood span73 646-75 352 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 646 nt75 352 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFME1071_RS13380GCF_000172655#EFME1071_RS13380
RRNarL
73 646-74 278 nt · Reverse (-)
EFME1071_RS13385GCF_000172655#EFME1071_RS13385
HKClassicCurrent focus
74 285-75 352 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172655#EFME1071_RS13385The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2775063
Simplified PFAM architecture for HKOC_2775063
PFAM domain coverage: 159 / 355 aa (44.8%)
1 aa355 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[155-223] | HATPase_c[262-351]
- Domain count: 2
- Matched identifier: HKOC_2775063
- Positioned domains: HisKA_3 155-223 ; HATPase_c 262-351
Cluster members and taxonomy
Representative gene: GCF_000172655#EFME1071_RS13385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 535 205 · GCF_000172655
AssemblyASM17265v1 · Contighaploid
Genome composition2 700 770 bp · 38,0% GCEnterococcus faecium E1071
Signal transduction countsGenes 39 · HK 19 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key