1 HAMP#1
182-251 aa · 70 aa · 11.5% of protein
Raw token
HAMP:182:4.57e-18:251:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFME1071_RS06005
Histidine kinase, Classic
Enterococcus faecium E1071 · GCF_000172655
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172655#EFME1071_RS06005Stable P2CS identifier used across views.
GenomeGCF_000172655Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPPASHisKAHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage358 / 611 aa (58.6%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation4 items
2 PAS#2
261-368 aa · 108 aa · 17.7% of protein
Raw token
PAS:261:0.00000000226:368:113:1133 HisKA#3
377-444 aa · 68 aa · 11.1% of protein
Raw token
HisKA:377:1.03e-18:444:68:644 HATPase_c#4
493-604 aa · 112 aa · 18.3% of protein
Raw token
HATPase_c:493:1e-31:604:112:109- Raw architecture: HAMP:182:4.57e-18:251:70:69#PAS:261:0.00000000226:368:113:113#HisKA:377:1.03e-18:444:68:64#HATPase_c:493:1e-31:604:112:109
- Domain description: 1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172655::NZ_ABQI01000015.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span74743-77287Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEfmE1071_0516RefSeq proteinWP_002294131.1
Context group ID
GCF_000172655::NZ_ABQI01000015.1::G00016Context members
EFME1071_RS06005EFME1071_RS06010
Partner locus tags
EFME1071_RS06005EFME1071_RS06010
Partner old locus tags
EfmE1071_0516EfmE1071_0517
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002294131.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3GUQ9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3GUQ9_ENTFCDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFME1071_RS06005Primary locus identifier stored in the genes table.
Old locus tagEfmE1071_0516Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABQI01000015.1Sequence record reported by the local genomic context database.
Genomic interval74 743-76 578 nt1 836 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span74 743-77 287 ntGCF_000172655::NZ_ABQI01000015.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172655::NZ_ABQI01000015.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABQI01000015.1All displayed genes belong to this local TCS context.
Neighborhood span74 743-77 287 nt2 545 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 743 nt77 287 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFME1071_RS06005GCF_000172655#EFME1071_RS06005
HKClassicCurrent focus
74 743-76 578 nt · Reverse (-)
EFME1071_RS06010GCF_000172655#EFME1071_RS06010
RROmpR
76 583-77 287 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157535#EFQG_RS13310Use this link to inspect the representative gene detail.
PFAM architectureCache_WalK + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1000690
Simplified PFAM architecture for HKOC_1000690
PFAM domain coverage: 381 / 611 aa (62.4%)
1 aa611 aa
Cache_WalKHAMPPASHisKAHATPase_c
- Simplified architecture: Cache_WalK + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: Cache_WalK[79-166] | HAMP[199-251] | PAS[262-323] | HisKA[378-444] | HATPase_c[493-603]
- Domain count: 5
- Matched identifier: HKOC_1000690
- Positioned domains: Cache_WalK 79-166 ; HAMP 199-251 ; PAS 262-323 ; HisKA 378-444 ; HATPase_c 493-603
Cluster members and taxonomy
Representative gene: GCF_000157535#EFQG_RS13310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 535 205 · GCF_000172655
AssemblyASM17265v1 · Contighaploid
Genome composition2 700 770 bp · 38,0% GCEnterococcus faecium E1071
Signal transduction countsGenes 39 · HK 19 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key