1 Response_reg#1
3-113 aa · 111 aa · 46.6% of protein
Raw token
Response_reg:3:2.76e-26:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFME1071_RS04870
Response regulator OmpR family
Enterococcus faecium E1071 · GCF_000172655
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172655#EFME1071_RS04870Stable P2CS identifier used across views.
GenomeGCF_000172655Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 238 aa (78.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-232 aa · 76 aa · 31.9% of protein
Raw token
Trans_reg_C:157:2.71e-36:232:78:77- Raw architecture: Response_reg:3:2.76e-26:113:111:111#Trans_reg_C:157:2.71e-36:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172655::NZ_ABQI01000011.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54355-56519Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEfmE1071_0275RefSeq proteinWP_002293942.1
Context group ID
GCF_000172655::NZ_ABQI01000011.1::G00017Context members
EFME1071_RS04865EFME1071_RS04870
Partner locus tags
EFME1071_RS04865EFME1071_RS04870
Partner old locus tags
EfmE1071_0274EfmE1071_0275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002293942.1Primary protein accession used for annex mappings.
UniProt accessionA0A829F2Q6Primary UniProt accession resolved in the annex database.
UniProt IDA0A829F2Q6_ENTFCDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFME1071_RS04870Primary locus identifier stored in the genes table.
Old locus tagEfmE1071_0275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABQI01000011.1Sequence record reported by the local genomic context database.
Genomic interval55 803-56 519 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 355-56 519 ntGCF_000172655::NZ_ABQI01000011.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172655::NZ_ABQI01000011.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABQI01000011.1All displayed genes belong to this local TCS context.
Neighborhood span54 355-56 519 nt2 165 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 355 nt56 519 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFME1071_RS04865GCF_000172655#EFME1071_RS04865
HKClassic
54 355-55 803 nt · Reverse (-)
EFME1071_RS04870GCF_000172655#EFME1071_RS04870
RROmpRCurrent focus
55 803-56 519 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157555#EFRG_RS08735Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932544
Simplified PFAM architecture for RROC_0932544
PFAM domain coverage: 182 / 238 aa (76.5%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-114] | Trans_reg_C[163-232]
- Domain count: 2
- Matched identifier: RROC_0932544
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; Trans_reg_C 163-232 ; Trans_reg_C 163-232
Cluster members and taxonomy
Representative gene: GCF_000157555#EFRG_RS08735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 535 205 · GCF_000172655
AssemblyASM17265v1 · Contighaploid
Genome composition2 700 770 bp · 38,0% GCEnterococcus faecium E1071
Signal transduction countsGenes 39 · HK 19 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key