1 PAS_3#1
586-649 aa · 64 aa · 6.2% of protein
Raw token
PAS_3:586:0.000000828:649:64:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS08955
Histidine kinase, Hybrid
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeHybridLength1039 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000172175#BACINT_RS08955Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1039 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage340 / 1039 aa (32.7%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1039 aa
Domain-by-domain annotation4 items
2 HisKA#2
678-742 aa · 65 aa · 6.3% of protein
Raw token
HisKA:678:5.23e-20:742:65:643 HATPase_c#3
792-895 aa · 104 aa · 10.0% of protein
Raw token
HATPase_c:792:2.1e-34:895:105:1094 Response_reg#4
920-1026 aa · 107 aa · 10.3% of protein
Raw token
Response_reg:920:1.78e-27:1026:108:111- Raw architecture: PAS_3:586:0.000000828:649:64:89#HisKA:678:5.23e-20:742:65:64#HATPase_c:792:2.1e-34:895:105:109#Response_reg:920:1.78e-27:1026:108:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000172175::NZ_ABJL02000007.1::G00089
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1342189-1345308Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_01929RefSeq proteinWP_007662397.1
Context group ID
GCF_000172175::NZ_ABJL02000007.1::G00089Context members
BACINT_RS08955
Partner locus tags
BACINT_RS08955
Partner old locus tags
BACINT_01929
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007662397.1Primary protein accession used for annex mappings.
UniProt accessionB3C8M5Primary UniProt accession resolved in the annex database.
UniProt IDB3C8M5_9BACEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS08955Primary locus identifier stored in the genes table.
Old locus tagBACINT_01929Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000007.1Sequence record reported by the local genomic context database.
Genomic interval1 342 189-1 345 308 nt3 120 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 342 189-1 345 308 ntGCF_000172175::NZ_ABJL02000007.1::G00089
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000007.1::G00089Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000007.1All displayed genes belong to this local TCS context.
Neighborhood span1 342 189-1 345 308 nt3 120 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 342 189 nt1 345 308 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BACINT_RS08955GCF_000172175#BACINT_RS08955
HKHybridCurrent focus
1 342 189-1 345 308 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS08955The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0265723
Simplified PFAM architecture for HKOC_0265723
PFAM domain coverage: 278 / 1039 aa (26.8%)
1 aa1039 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[678-742] | HATPase_c[790-894] | Response_reg[920-1027]
- Domain count: 3
- Matched identifier: HKOC_0265723
- Positioned domains: HisKA 678-742 ; HATPase_c 790-894 ; Response_reg 920-1027
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS08955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key