Gene detail

BACINT_RS00870

Histidine kinase, Hybrid

Bacteroides intestinalis DSM 17393 · GCF_000172175

Open genome Open selected cluster RefSeq UniProt

ClassHKTypeHybridLength1345 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_000172175#BACINT_RS00870Stable P2CS identifier used across views.

GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides

Selected clusterHKOC_0097818Run 6 · 29 sequences · id 100% · cov 80% · representative

External referencesWP_044154569.1 · A0A3E4KZL0 · MIST4 BACINT_RS00870RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_cResponse_regHTH_AraC

Protein length1345 aaLength used to scale native and Biotite-like views.

Annotated domains44 with usable coordinates.

Domain coverage312 / 1345 aa (23.2%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa1345 aa

Domain-by-domain annotation4 items

1 HisKA#1

836-894 aa · 59 aa · 4.4% of protein

Raw tokenHisKA:836:0.0000000000128:894:60:64

2 HATPase_c#2

941-1048 aa · 108 aa · 8.0% of protein

Raw tokenHATPase_c:941:2.22e-33:1048:109:109

3 Response_reg#3

1100-1210 aa · 111 aa · 8.3% of protein

Raw tokenResponse_reg:1100:8.52e-31:1210:112:111

4 HTH_AraC#4

1309-1342 aa · 34 aa · 2.5% of protein

Raw tokenHTH_AraC:1309:0.0000055:1342:34:42

Raw architecture: HisKA:836:0.0000000000128:894:60:64#HATPase_c:941:2.22e-33:1048:109:109#Response_reg:1100:8.52e-31:1210:112:111#HTH_AraC:1309:0.0000055:1342:34:42
Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_000172175::NZ_ABJL02000001.1::G00107

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span234212-238249Genomic interval covered by the local TCS group.

Identifiers

Old locus tagBACINT_00188RefSeq proteinWP_044154569.1

Context group IDGCF_000172175::NZ_ABJL02000001.1::G00107

Context members

BACINT_RS00870

Partner locus tags

BACINT_RS00870

Partner old locus tags

BACINT_00188

Partner protein IDs

WP_044154569.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_044154569.1Primary protein accession used for annex mappings.

UniProt accessionA0A3E4KZL0Primary UniProt accession resolved in the annex database.

UniProt IDA0A3E4KZL0_9BACEDisplay identifier provided by UniProt.

GO / PubMed4 / 1Unique GO terms and literature references available below.

Reference hubs

Open RefSeq Open UniProt accession

GO terms

GO:0005524 GO:0003700 GO:0000155 GO:0043565

PubMed

30630933

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagBACINT_RS00870Primary locus identifier stored in the genes table.

Old locus tagBACINT_00188Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_ABJL02000001.1Sequence record reported by the local genomic context database.

Genomic interval234 212-238 249 nt4 038 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span234 212-238 249 ntGCF_000172175::NZ_ABJL02000001.1::G00107

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000172175::NZ_ABJL02000001.1::G00107

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_ABJL02000001.1All displayed genes belong to this local TCS context.

Neighborhood span234 212-238 249 nt4 038 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

234 212 nt238 249 nt

+-BACINT_RS00870

Neighborhood gene cards

1 gene in the current local neighborhood.

BACINT_RS00870GCF_000172175#BACINT_RS00870

HKHybridCurrent focus

234 212-238 249 nt · Reverse (-)

Old locus BACINT_00188RefSeq WP_044154569.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0097818HK

Run 629 sequencesid 100%cov 80%

PFAM Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18

Current gene is the representative sequence.

Selected clusterHKOC_0097818Run 6 · HK · 29 sequences

Representative sequenceGCF_000172175#BACINT_RS00870The current gene is the representative for this cluster.

PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1811 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_0097818

Simplified PFAM architecture for HKOC_0097818

PFAM domain coverage: 559 / 1345 aa (41.6%)

1 aa1345 aa

Reg_propReg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18

Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
Raw architecture: Reg_prop[37-60] | Reg_prop[255-277] | Reg_prop[302-324] | Reg_prop[349-371] | Reg_prop[443-462] | Reg_prop[576-598] | Y_Y_Y[711-775] | HisKA[832-893] | HATPase_c[941-1047] | Response_reg[1100-1210] | HTH_18[1267-1344]
Domain count: 11
Matched identifier: HKOC_0097818
Positioned domains: Reg_prop 37-60 ; Reg_prop 255-277 ; Reg_prop 302-324 ; Reg_prop 349-371 ; Reg_prop 443-462 ; Reg_prop 576-598 ; Y_Y_Y 711-775 ; HisKA 832-893 ; HATPase_c 941-1047 ; Response_reg 1100-1210 ; HTH_18 1267-1344

Cluster members and taxonomy

Representative gene: GCF_000172175#BACINT_RS00870

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175

AssemblyASM17217v1 · Contigreference genome · haploid

Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393

Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides

Lineage path7 lineage nodes

1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key