1 Response_reg#1
10-121 aa · 112 aa · 51.6% of protein
Raw token
Response_reg:10:5.21e-25:121:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS00045
Response regulator NarL family
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172175#BACINT_RS00045Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 217 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-208 aa · 58 aa · 26.7% of protein
Raw token
HTH_LUXR:151:2.21e-16:208:58:58- Raw architecture: Response_reg:10:5.21e-25:121:112:111#HTH_LUXR:151:2.21e-16:208:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172175::NZ_ABJL02000001.1::G00106
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6298-9160Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_00010RefSeq proteinWP_007659546.1
Context group ID
GCF_000172175::NZ_ABJL02000001.1::G00106Context members
BACINT_RS00040BACINT_RS00045
Partner locus tags
BACINT_RS00040BACINT_RS00045
Partner old locus tags
BACINT_00009BACINT_00010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007659546.1Primary protein accession used for annex mappings.
UniProt accessionB3C530Primary UniProt accession resolved in the annex database.
UniProt IDB3C530_9BACEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS00045Primary locus identifier stored in the genes table.
Old locus tagBACINT_00010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000001.1Sequence record reported by the local genomic context database.
Genomic interval8 507-9 160 nt654 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 298-9 160 ntGCF_000172175::NZ_ABJL02000001.1::G00106
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000001.1::G00106Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000001.1All displayed genes belong to this local TCS context.
Neighborhood span6 298-9 160 nt2 863 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 298 nt9 160 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BACINT_RS00040GCF_000172175#BACINT_RS00040
HKClassic
6 298-8 499 nt · Forward (+)
BACINT_RS00045GCF_000172175#BACINT_RS00045
RRNarLCurrent focus
8 507-9 160 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS00045The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847772
Simplified PFAM architecture for RROC_1847772
PFAM domain coverage: 165 / 217 aa (76.0%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[10-121] | GerE[155-207]
- Domain count: 2
- Matched identifier: RROC_1847772
- Positioned domains: Response_reg 10-121 ; Response_reg 10-121 ; GerE 155-207 ; GerE 155-207
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS00045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key