1 HAMP#1
191-264 aa · 74 aa · 14.6% of protein
Raw token
HAMP:191:0.0000000000000935:264:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORFOR_RS05940
Histidine kinase, Classic
Dorea formicigenerans ATCC 27755 · GCF_000169235
ClassHKTypeClassicLength507 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000169235#DORFOR_RS05940Stable P2CS identifier used across views.
GenomeGCF_000169235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length507 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 507 aa (50.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa507 aa
Domain-by-domain annotation3 items
2 His_kinase#2
279-358 aa · 80 aa · 15.8% of protein
Raw token
His_kinase:279:1.46e-31:358:80:803 HATPase_c#3
378-480 aa · 103 aa · 20.3% of protein
Raw token
HATPase_c:378:1.45e-16:480:107:109- Raw architecture: HAMP:191:0.0000000000000935:264:74:69#His_kinase:279:1.46e-31:358:80:80#HATPase_c:378:1.45e-16:480:107:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000169235::NZ_AAXA02000012.1::G00028
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span78861-82628Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORFOR_01290RefSeq proteinWP_233420469.1
Context group ID
GCF_000169235::NZ_AAXA02000012.1::G00028Context members
DORFOR_RS05940DORFOR_RS05945DORFOR_RS05950
Partner locus tags
DORFOR_RS05940DORFOR_RS05945DORFOR_RS05950
Partner old locus tags
DORFOR_01290DORFOR_01291DORFOR_01292
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_233420469.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORFOR_RS05940Primary locus identifier stored in the genes table.
Old locus tagDORFOR_01290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAXA02000012.1Sequence record reported by the local genomic context database.
Genomic interval78 861-80 384 nt1 524 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span78 861-82 628 ntGCF_000169235::NZ_AAXA02000012.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169235::NZ_AAXA02000012.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAXA02000012.1All displayed genes belong to this local TCS context.
Neighborhood span78 861-82 628 nt3 768 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 861 nt82 628 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DORFOR_RS05940GCF_000169235#DORFOR_RS05940
HKClassicCurrent focus
78 861-80 384 nt · Reverse (-)
DORFOR_RS05945GCF_000169235#DORFOR_RS05945
HKClassic
80 487-81 803 nt · Reverse (-)
DORFOR_RS05950GCF_000169235#DORFOR_RS05950
RROmpR
81 954-82 628 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS05940The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1440473
Simplified PFAM architecture for HKOC_1440473
PFAM domain coverage: 230 / 507 aa (45.4%)
1 aa507 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[217-263] | His_kinase[279-356] | HATPase_c[377-481]
- Domain count: 3
- Matched identifier: HKOC_1440473
- Positioned domains: HAMP 217-263 ; His_kinase 279-356 ; HATPase_c 377-481
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS05940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 461 · GCF_000169235
AssemblyASM16923v1 · Contighaploid
Genome composition3 186 031 bp · 41,0% GCDorea formicigenerans ATCC 27755
Signal transduction countsGenes 84 · HK 44 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key