1 KdpD#1
24-232 aa · 209 aa · 23.2% of protein
Raw token
KdpD:24:3.64e-135:232:209:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORFOR_RS00660
Histidine kinase, Classic
Dorea formicigenerans ATCC 27755 · GCF_000169235
ClassHKTypeClassicLength899 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000169235#DORFOR_RS00660Stable P2CS identifier used across views.
GenomeGCF_000169235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length899 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage390 / 899 aa (43.4%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa899 aa
Domain-by-domain annotation3 items
2 HisKA#2
671-738 aa · 68 aa · 7.6% of protein
Raw token
HisKA:671:0.0000000000103:738:68:643 HATPase_c#3
782-894 aa · 113 aa · 12.6% of protein
Raw token
HATPase_c:782:2.52e-29:894:113:109- Raw architecture: KdpD:24:3.64e-135:232:209:210#HisKA:671:0.0000000000103:738:68:64#HATPase_c:782:2.52e-29:894:113:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000169235::NZ_AAXA02000004.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26340-29733Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORFOR_00146RefSeq proteinWP_005330395.1
Context group ID
GCF_000169235::NZ_AAXA02000004.1::G00045Context members
DORFOR_RS00660DORFOR_RS00665
Partner locus tags
DORFOR_RS00660DORFOR_RS00665
Partner old locus tags
DORFOR_00146DORFOR_00147
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005330395.1Primary protein accession used for annex mappings.
UniProt accessionB0G1P8Primary UniProt accession resolved in the annex database.
UniProt IDB0G1P8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORFOR_RS00660Primary locus identifier stored in the genes table.
Old locus tagDORFOR_00146Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAXA02000004.1Sequence record reported by the local genomic context database.
Genomic interval26 340-29 039 nt2 700 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 340-29 733 ntGCF_000169235::NZ_AAXA02000004.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169235::NZ_AAXA02000004.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAXA02000004.1All displayed genes belong to this local TCS context.
Neighborhood span26 340-29 733 nt3 394 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 340 nt29 733 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DORFOR_RS00660GCF_000169235#DORFOR_RS00660
HKClassicCurrent focus
26 340-29 039 nt · Forward (+)
DORFOR_RS00665GCF_000169235#DORFOR_RS00665
RROmpR
29 032-29 733 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS00660The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0407365
Simplified PFAM architecture for HKOC_0407365
PFAM domain coverage: 493 / 899 aa (54.8%)
1 aa899 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[24-232] | DUF4118[404-509] | HisKA[671-738] | HATPase_c[783-892]
- Domain count: 4
- Matched identifier: HKOC_0407365
- Positioned domains: KdpD 24-232 ; DUF4118 404-509 ; HisKA 671-738 ; HATPase_c 783-892
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS00660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 461 · GCF_000169235
AssemblyASM16923v1 · Contighaploid
Genome composition3 186 031 bp · 41,0% GCDorea formicigenerans ATCC 27755
Signal transduction countsGenes 84 · HK 44 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key